Stabilization of the hexasome intermediate during histone exchange by yeast SWR1 complex
Adam S B Jalal1, Paul Girvan2, Eugene Y D Chua1
1Section of Structural Biology, Department Infectious Disease, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK.
Molecular Cell
|September 3, 2024
Summary
The SWR1 complex facilitates histone exchange in yeast. Cryo-EM reveals how the Swc5 subunit aids DNA unwrapping during this process, offering insights into histone exchange mechanisms.
Area of Science:
- Molecular Biology
- Structural Biology
- Epigenetics
Background:
- The SWR1 complex is crucial for replacing canonical histone H2A/H2B dimers with Htz1/H2B variants in yeast nucleosomes.
- This histone exchange is vital for regulating gene expression and chromatin structure.
Purpose of the Study:
- To elucidate the structural mechanism of histone exchange mediated by the SWR1 complex.
- To understand the role of specific subunits and intermediates in the SWR1-catalyzed reaction.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was employed to determine the structure of key reaction intermediates.
- Biochemical engineering, including crosslinking of histone dimers and chaperones, was used to trap and analyze complexes.
Main Results:
- A hexasome intermediate structure revealed the Swc5 subunit's role in stabilizing DNA unwrapping from the histone core.
- Engineered crosslinks demonstrated how chaperone-histone interactions influence the exchange process.
- A trapped SWR1/hexasome complex provided structural insights into the subsequent step of histone insertion.
Conclusions:
- The study provides high-resolution structural snapshots of the SWR1 histone exchange mechanism.
- Key structural features, including the Swc5 subunit's function and chaperone interactions, are elucidated.
- These findings advance our understanding of chromatin remodeling and epigenetic regulation.
Related Concept Videos
Nucleosome Remodeling
9.0K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.0K
Restarting Stalled Replication Forks
5.8K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.8K
Cohesins
4.4K
Cohesin protein complexes are a molecular glue that holds two sister chromatids together. They play an important role both in mitosis and meiosis. In mitosis, all cohesin complexes present on the chromosomes are removed before the start of the anaphase stage.
Cohesin complexes in Meiotic Division
Meiosis involves two distinct rounds of chromosomal segregation and cell divisions— Meiosis I followed by Meiosis II – producing four daughter cells. Meiosis I includes the separation of...
Cohesin complexes in Meiotic Division
Meiosis involves two distinct rounds of chromosomal segregation and cell divisions— Meiosis I followed by Meiosis II – producing four daughter cells. Meiosis I includes the separation of...
4.4K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K
The Spindle Assembly Checkpoint
3.1K
The spindle assembly checkpoint is a molecular surveillance mechanism ensuring the fidelity of chromosome segregation during anaphase. The checkpoint monitors the completion of all the prerequisite steps before chromosome segregation to determine whether the segregation process should proceed or be delayed.
Many proteins function together to control the spindle assembly checkpoint. Mutations affecting these proteins may allow cells to proceed into anaphase prematurely, resulting in the...
Many proteins function together to control the spindle assembly checkpoint. Mutations affecting these proteins may allow cells to proceed into anaphase prematurely, resulting in the...
3.1K
Histone Variants at the Centromere
4.3K
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
4.3K


