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Updated: Jun 14, 2025

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Complete genome sequences of Enterococcus casseliflavus strains ASE2 and ASE4 generated by PacBio sequencing
Thao D Tran1, SangIn Lee1, Robert Hnasko2
1U.S. Department of Agriculture, Foodborne Toxin Detection and Prevention Research Unit, Agricultural Research Service, Albany, California, USA.
Two Enterococcus casseliflavus strains, ASE2 and ASE4, were identified from California lettuce farm soil. Their complete genome sequences reveal a single circular chromosome, offering insights into microbial soil communities.
Area of Science:
- Microbiology
- Genomics
- Environmental Science
Background:
- Enterococcus casseliflavus is a species of Gram-positive bacteria found in various environments.
- Soil microbial communities play crucial roles in agricultural ecosystems.
- Understanding the genetic makeup of soil bacteria is essential for agricultural applications.
Purpose of the Study:
- To characterize the complete genome sequences of Enterococcus casseliflavus strains ASE2 and ASE4.
- To investigate the genomic features of these strains isolated from agricultural soil.
Main Methods:
- Bacterial isolation from lettuce farm soil in Salinas, California.
- Whole-genome sequencing using the PacBio Sequel II platform.
- Bioinformatic analysis of the generated genome sequences.
Main Results:
- Complete genome sequences for Enterococcus casseliflavus strains ASE2 and ASE4 were successfully generated.
- Both strains possess a single, circular chromosome.
- No plasmids were detected in either strain.
Conclusions:
- The genomic data provides a foundational resource for future studies on Enterococcus casseliflavus.
- The absence of plasmids may influence the adaptability and characteristics of these soil-dwelling strains.
- Further research can explore the ecological role and potential applications of these specific Enterococcus casseliflavus isolates.
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