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Updated: Jun 13, 2025

Assessment of Global DNA Double-Strand End Resection using BrdU-DNA Labeling coupled with Cell Cycle Discrimination Imaging
Published on: April 28, 2021
Mechanism of BRCA1-BARD1 function in DNA end resection and DNA protection
Ilaria Ceppi1, Maria Rosaria Dello Stritto1, Martin Mütze2
1Institute for Research in Biomedicine, Università della Svizzera italiana (USI), Faculty of Biomedical Sciences, Bellinzona, Switzerland.
Abstract:
DNA double-strand break (DSB) repair by homologous recombination is initiated by DNA end resection, a process involving the controlled degradation of the 5'-terminated strands at DSB sites1,2. The breast cancer suppressor BRCA1-BARD1 not only promotes resection and homologous recombination, but it also protects DNA upon replication stress1,3-9. BRCA1-BARD1 counteracts the anti-resection and pro-non-homologous end-joining factor 53BP1, but whether it functions in resection directly has been unclear10-16. Using purified recombinant proteins, we show here that BRCA1-BARD1 directly promotes long-range DNA end resection pathways catalysed by the EXO1 or DNA2 nucleases. In the DNA2-dependent pathway, BRCA1-BARD1 stimulates DNA unwinding by the Werner or Bloom helicase. Together with MRE11-RAD50-NBS1 and phosphorylated CtIP, BRCA1-BARD1 forms the BRCA1-C complex17,18, which stimulates resection synergistically to an even greater extent. A mutation in phosphorylated CtIP (S327A), which disrupts its binding to the BRCT repeats of BRCA1 and hence the integrity of the BRCA1-C complex19-21, inhibits resection, showing that BRCA1-C is a functionally integrated ensemble. Whereas BRCA1-BARD1 stimulates resection in DSB repair, it paradoxically also protects replication forks from unscheduled degradation upon stress, which involves a homologous recombination-independent function of the recombinase RAD51 (refs. 4-6,8). We show that in the presence of RAD51, BRCA1-BARD1 instead inhibits DNA degradation. On the basis of our data, the presence and local concentration of RAD51 might determine the balance between the pronuclease and the DNA protection functions of BRCA1-BARD1 in various physiological contexts.
Insights
The BRCA1-BARD1 complex directly promotes DNA end resection for double-strand break repair. Its function shifts to DNA protection in the presence of RAD51, balancing repair and replication fork stability.
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Cancer Biology
Background:
- DNA double-strand breaks (DSBs) are repaired via homologous recombination (HR), initiated by DNA end resection.
- The BRCA1-BARD1 complex is known to promote HR and protect DNA during replication stress.
- Its direct role in promoting DNA resection has been a key question in the field.
Purpose of the Study:
- To investigate the direct role of BRCA1-BARD1 in DNA end resection.
- To elucidate the mechanisms by which BRCA1-BARD1 influences resection pathways.
- To understand how BRCA1-BARD1's function is modulated by other key proteins like RAD51.
Main Methods:
- Biochemical assays using purified recombinant proteins.
- Enzymatic activity assays for nucleases (EXO1, DNA2) and helicases (Werner, Bloom).
- Analysis of protein complex formation (BRCA1-C complex) and mutational effects.
Main Results:
- BRCA1-BARD1 directly stimulates long-range DNA end resection by EXO1 and DNA2 nucleases.
- BRCA1-BARD1 facilitates DNA unwinding by Werner or Bloom helicase in the DNA2 pathway.
- The integrated BRCA1-C complex, including MRE11-RAD50-NBS1 and CtIP, synergistically enhances resection.
- BRCA1-BARD1 inhibits DNA degradation in the presence of RAD51, suggesting a switch in function.
Conclusions:
- BRCA1-BARD1 is a direct promoter of DNA end resection, crucial for DSB repair.
- The BRCA1-C complex is a functionally integrated unit that enhances resection.
- BRCA1-BARD1 exhibits context-dependent functions, acting as a pronuclease in resection and a DNA protector at replication forks, modulated by RAD51 concentration.
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