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Updated: Jun 13, 2025

Probiotic Studies in Neonatal Mice Using Gavage
Published on: January 27, 2019
Effect of intrapartum azithromycin on gut microbiota development in early childhood: A post hoc analysis of a
Bakary Sanyang1, Thushan I de Silva1,2, Bully Camara1
1Medical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Insights
Intrapartum azithromycin alters infant gut microbiota, increasing proinflammatory bacteria and slowing development in the first month. This early-life antibiotic exposure may lead to long-term, undesirable health consequences for children.
Area of Science:
- Microbiology
- Neonatal Health
- Public Health
Background:
- Intrapartum azithromycin prophylaxis can reduce maternal infections but does not impact neonatal sepsis or mortality.
- Early-life antibiotic exposure may negatively affect gut microbiota development and lead to adverse health outcomes.
Purpose of the Study:
- To assess the impact of 2g oral intrapartum azithromycin on gut microbiota development in infants from birth to 3 years.
- To investigate potential long-term consequences of early-life antibiotic exposure on the infant gut microbiome.
Main Methods:
- Analysis of rectal samples from 127 healthy infants in the PregnAnZI-2 double-blind randomized placebo-controlled trial.
- 16S-rRNA gene profiling was used to characterize gut microbiota composition and trajectories.
- Comparison of microbiota development between azithromycin and placebo groups during the first month of life.
Main Results:
- Infants receiving intrapartum azithromycin exhibited slower gut microbiota community transition in the first month.
- Significant increase in Enterobacteriaceae (p=0.001) and a decrease in Bifidobacterium (p<0.001) were observed in the azithromycin group.
- A trend towards increased Enterococcaceae (p=0.064) was noted in infants exposed to azithromycin.
Conclusions:
- Intrapartum azithromycin significantly alters infant gut microbiota development during the crucial first month of life.
- The observed increase in proinflammatory bacteria and decrease in beneficial Bifidobacterium may have undesirable long-term health effects.
- Further research is warranted to understand the full implications of these early-life microbiome alterations.
Abstract:
Intrapartum azithromycin prophylaxis has shown the potential to reduce maternal infections but showed no effect on neonatal sepsis and mortality. Antibiotic exposure early in life may affect gut microbiota development, leading to undesired consequences. Therefore, we here assessed the impact of 2 g oral intrapartum azithromycin on gut microbiota development from birth to the age of 3 years, by 16S-rRNA gene profiling of rectal samples from 127 healthy Gambian infants selected from a double-blind randomized placebo-controlled clinical trial (PregnAnZI-2). Microbiota trajectories showed, over the first month of life, a slower community transition and increase of Enterobacteriaceae (p = 0.001) and Enterococcaceae (p = 0.064) and a decrease of Bifidobacterium (p < 0.001) in the azithromycin compared to the placebo arm. Intrapartum azithromycin alters gut microbiota development and increases proinflammatory bacteria in the first month of life, which may have undesirable effects on the child.
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