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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Exploring causal correlations between plasma proteins and peripheral neuropathy: a Mendelian randomization.
Man Song1, Fang Chen1, Xiaocong Li2
1Department of Intensive Care Unit, Baoji Hospital of Traditional Chinese Medicine, Baoji, China.
This study used Mendelian randomization to identify plasma proteins causally linked to peripheral neuropathy (PN). Eight proteins were found to be associated with PN risk, with three identified as potential drug targets for novel therapies.
Area of Science:
- Genetics
- Proteomics
- Neurology
Background:
- Peripheral neuropathy (PN) is a common neurological disorder.
- Circulating plasma proteins with causal genetic evidence represent key therapeutic targets.
Purpose of the Study:
- To identify plasma proteins causally associated with the risk of six common types of peripheral neuropathy.
- To discover novel therapeutic targets for PN through protein-mediated pathogenesis insights.
Main Methods:
- Employed two-sample Mendelian randomization (MR) and genome-wide association studies (GWAS) on plasma proteomes from 35,559 individuals.
- Utilized summary data for six common PN types from the FinnGen database.
- Conducted colocalization and drug-gene interaction analyses to identify causal protein-PN pairs and potential drug targets.
Main Results:
- Identified eight proteins (UBC12, SEM4C, IL23R, Prothrombin, CBS, Microglobulin, MATN4, COLEC12) with causal relationships to PN.
- UBC12 showed a protective effect for diabetic neuropathy (DP) and carpal tunnel syndrome (CTS); others were risk factors.
- Pathway enrichment analysis highlighted proteins involved in immune response and signaling pathways. Three genes (IL23R, F2, CBS) were identified as potential drug targets.
Conclusions:
- Mendelian randomization confirms causal links between genetically predicted PN risk and plasma protein abundance.
- Plasma proteins serve as valuable biomarkers for PN and potential targets for therapeutic interventions.
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