Related Experiment Video
Updated: Jun 13, 2025

Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures
Published on: December 1, 2020
4-Methoxypicolinic Acid N-Oxide: One of the Shortest Hydrogen Bonds Known Characterized by Neutron Diffraction,
Jernej Stare1, Jože Grdadolnik1, Sax Mason2
1Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia.
Abstract:
The present work focuses on the case of an extremely short intramolecular O-H···O hydrogen bond (H-bond) found in 4-methoxypicolinic acid N-oxide (MPANO). The donor···acceptor separation of 2.403 Å makes the H-bond in MPANO one of the shortest H-bonds known. We elucidated the structure and dynamics of the H-bond by two neutron-based techniques, namely, single-crystal diffraction and inelastic scattering (INS) vibrational spectroscopy. We also utilized conventional infrared (IR) spectroscopy as well as quantum chemical computations on isolated and periodic models. Both the protiated and deuterated variants of MPANO were investigated by INS and IR. All the methods used unequivocally confirm the existence of an extremely short, asymmetric H-bond, with the proton located near yet off the midpoint. The main relevant feature of the IR spectrum is an extremely broad, complex, and red-shifted OH (OD) stretching band spanning between 1800 and 500 cm-1 and centered at about 1360 cm-1, which indicates the presence of extensive anharmonicity and coupling with other H-bond modes. Of the modes characteristic of H-bond dynamics, only the out-of-plane OH (OD) bending can clearly be detected in the INS spectra; it has a relatively high frequency indicative of the strength of the H-bond. The computed structure is in excellent agreement with the diffraction measurement when periodicity is taken into account. The calculated harmonic frequencies show a reasonable match with the observed spectral features, whereby the assignment of the IR and INS spectra is facilitated. The hydrogen stretching frequency, however, appears to be significantly overestimated, on account of the limitations of the harmonic approximation and the complex nature of the short H-bond.
More Related Videos
14:55Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
Published on: September 17, 2017
08:48High-Resolution Neutron Spectroscopy to Study Picosecond-Nanosecond Dynamics of Proteins and Hydration Water
Published on: April 28, 2022
Related Concept Videos
2D NMR: Overview of Heteronuclear Correlation Techniques
NMR and Mass Spectroscopy of Carboxylic Acids
While α protons of carboxylic acids absorb at 2–2.5 ppm, β protons absorb further upfield.
Carboxylic acids are easily identified by dissolving them in deuterium oxide, which results in a rapid exchange of the acidic protons with deuterium. This leads to the...
Nuclear Overhauser Enhancement (NOE)
2D NMR: Overview of Homonuclear Correlation Techniques
COSY90 is the standard two-dimensional (2D) COSY experiment that...
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)