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Updated: Jun 12, 2025

Plasmid Stability Analysis with Open-Source Droplet Microfluidics
Published on: December 27, 2024
The plasmid-borne hipBA operon of Klebsiella michiganensis encodes a potent plasmid stabilization system
Jordan Shutt-McCabe1, Karimunnisa Begum Shaik1, Lesley Hoyles1
1Department of Biosciences, Nottingham Trent University, Clifton, Nottingham NG11 8NS, United Kingdom.
Aims:
Klebsiella michiganensis is a medically important bacterium that has been subject to relatively little attention in the literature. Interrogation of sequence data from K. michiganensis strains in our collection has revealed the presence of multiple large plasmids encoding type II toxin-antitoxin (TA) systems. Such TA systems are responsible for mediating a range of phenotypes, including plasmid stability ('addiction') and antibiotic persistence. In this work, we characterize the hipBA TA locus found within the Klebsiella oxytoca species complex (KoSC).
Methods And Results:
The HipBA TA system is encoded on a plasmid carried by K. michiganensis PS_Koxy4, isolated from an infection outbreak. Employing viability and plasmid stability assays, we demonstrate that PS_Koxy4 HipA is a potent antibacterial toxin and that HipBA is a functional TA module contributing substantially to plasmid maintenance. Further, we provide in silico data comparing HipBA modules across the entire KoSC.
Conclusions:
We provide the first evidence of the role of a plasmid-encoded HipBA system in stability of mobile genetic elements and analyse the presence of HipBA across the KoSC. These results expand our knowledge of both a common enterobacterial TA system and a highly medically relevant group of bacteria.
Insights
This study characterizes the HipBA toxin-antitoxin system in Klebsiella michiganensis, revealing its role in plasmid stability and antibiotic persistence. The findings enhance understanding of this medically important bacterium and common enterobacterial systems.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Klebsiella michiganensis is a medically significant bacterium with limited research.
- Type II toxin-antitoxin (TA) systems on plasmids influence bacterial phenotypes like plasmid stability and antibiotic persistence.
- The HipBA TA locus is investigated within the Klebsiella oxytoca species complex (KoSC).
Purpose of the Study:
- To characterize the HipBA toxin-antitoxin system in Klebsiella michiganensis.
- To understand the role of HipBA in plasmid maintenance and bacterial phenotypes.
- To analyze the distribution of HipBA systems across the KoSC.
Main Methods:
- Plasmid DNA analysis from K. michiganensis strains.
- Viability and plasmid stability assays using the K. michiganensis PS_Koxy4 strain.
- In silico comparative analysis of HipBA modules across the KoSC.
Main Results:
- The HipBA system is present on a plasmid in K. michiganensis PS_Koxy4, isolated from an infection outbreak.
- PS_Koxy4 HipA functions as a potent antibacterial toxin, and HipBA significantly contributes to plasmid maintenance.
- Comparative in silico data reveal the presence and variations of HipBA modules within the KoSC.
Conclusions:
- This study provides the first evidence for a plasmid-encoded HipBA system's role in mobile genetic element stability.
- The research expands knowledge of a common enterobacterial TA system and its relevance in a medically important bacterial group.
- Findings contribute to understanding K. michiganensis and TA system functions in bacterial pathogenesis and evolution.
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