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Updated: Jun 12, 2025

Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples
Published on: December 2, 2022
Recent developments of topoisomerase inhibitors: Clinical trials, emerging indications, novel molecules and global
Andrey D Bondarev1, Jörgen Jonsson1, Vladimir N Chubarev2
1Department of Surgical Sciences, Functional Pharmacology and Neuroscience, Uppsala University, Uppsala, Sweden.
Abstract:
The nucleic acid topoisomerases (TOP) are an evolutionary conserved mechanism to solve topological problems within DNA and RNA that have been historically well-established as a chemotherapeutic target. During investigation of trends within clinical trials, we have identified a very high number of clinical trials involving TOP inhibitors, prompting us to further evaluate the current status of this class of therapeutic agents. In total, we have identified 233 unique molecules with TOP-inhibiting activity. In this review, we provide an overview of the clinical drug development highlighting advances in current clinical uses and discussing novel drugs and indications under development. A wide range of bacterial infections, along with solid and hematologic neoplasms, represent the bulk of clinically approved indications. Negative ADR profile and drug resistance among the antibacterial TOP inhibitors and anthracycline-mediated cardiotoxicity in the antineoplastic TOP inhibitors are major points of concern, subject to continuous research efforts. Ongoing development continues to focus on bacterial infections and cancer; however, there is a degree of diversification in terms of novel drug classes and previously uncovered indications, such as glioblastoma multiforme or Clostridium difficile infections. Preclinical studies show potential in viral, protozoal, parasitic and fungal infections as well and suggest the emergence of a novel target, TOP IIIβ. We predict further growth and diversification of the field thanks to the large number of experimental TOP inhibitors emerging.
Insights
Nucleic acid topoisomerases (TOP) inhibitors are crucial in treating bacterial infections and cancers. Research shows 233 molecules targeting TOP, with ongoing development for new indications and drug classes.
Area of Science:
- Biochemistry
- Pharmacology
- Oncology
Background:
- Nucleic acid topoisomerases (TOP) are essential enzymes for DNA/RNA topology.
- TOP inhibitors are established chemotherapeutic targets.
- A surge in clinical trials highlights their therapeutic relevance.
Purpose of the Study:
- To review the current status of TOP inhibitors in clinical drug development.
- To highlight advances in clinical uses and novel drug indications.
- To identify emerging trends and challenges in TOP inhibitor research.
Main Methods:
- Comprehensive review of clinical trial data.
- Identification and analysis of 233 unique TOP-inhibiting molecules.
- Evaluation of approved indications and ongoing research.
Main Results:
- TOP inhibitors are approved for bacterial infections and neoplasms (solid and hematologic).
- Key concerns include adverse drug reactions (ADR) and resistance in antibacterials, and cardiotoxicity in antineoplastics.
- Development is expanding to glioblastoma multiforme, Clostridium difficile infections, and preclinical viral, protozoal, parasitic, and fungal infections.
Conclusions:
- TOP inhibitors represent a diverse and growing therapeutic class.
- Continued research focuses on overcoming resistance and toxicity.
- Emerging targets like TOP IIIβ and novel indications promise future diversification.
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