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Updated: Jun 12, 2025

Growth of Mycobacterium tuberculosis Biofilms
Published on: February 15, 2012
Role of DNA Double-Strand Break Formation in Gyrase Inhibitor-Mediated Killing of Nonreplicating Persistent
Priyanka Ashwath1, Paulina Osiecki1, Danielle Weiner2,3
1Center for Discovery and Innovation, Hackensack Meridian Health, 111 Ideation Way, Nutley, New Jersey 07110, United States.
Abstract:
Tuberculosis is the leading cause of mortality by infectious agents worldwide. The necrotic debris, known as caseum, which accumulates in the center of pulmonary lesions and cavities is home to nonreplicating drug-tolerant Mycobacterium tuberculosis that presents a significant hurdle to achieving a fast and durable cure. Fluoroquinolones such as moxifloxacin are highly effective at killing this nonreplicating persistent bacterial population and boosting TB lesion sterilization. Fluoroquinolones target bacterial DNA gyrase, which catalyzes the negative supercoiling of DNA and relaxes supercoils ahead of replication forks. In this study, we investigated the potency of several other classes of gyrase inhibitors against M. tuberculosis in different states of replication. In contrast to fluoroquinolones, many other gyrase inhibitors kill only replicating bacterial cultures but produce negligible cidal activity against M. tuberculosis in ex vivo rabbit caseum. We demonstrate that while these inhibitors are capable of inhibiting M. tuberculosis gyrase DNA supercoiling activity, fluoroquinolones are unique in their ability to cleave double-stranded DNA at low micromolar concentrations. We hypothesize that double-strand break formation is an important driver of gyrase inhibitor-mediated bactericidal potency against nonreplicating persistent M. tuberculosis populations in the host. This study provides general insight into the lesion sterilization potential of different gyrase inhibitor classes and informs the development of more effective chemotherapeutic options against persistent mycobacterial infections.
Insights
Fluoroquinolones kill nonreplicating tuberculosis bacteria in lesions by forming DNA double-strand breaks, unlike other gyrase inhibitors. This finding aids in developing better tuberculosis treatments.
Area of Science:
- Microbiology
- Infectious Diseases
- Pharmacology
Background:
- Tuberculosis (TB) remains a leading global infectious cause of death.
- Nonreplicating Mycobacterium tuberculosis in caseum lesions are drug-tolerant, hindering TB cures.
- Fluoroquinolones effectively target these persistent bacteria and sterilize TB lesions.
Purpose of the Study:
- To investigate the efficacy of various gyrase inhibitors against Mycobacterium tuberculosis in different replicative states.
- To compare the activity of fluoroquinolones with other gyrase inhibitors against persistent M. tuberculosis.
- To elucidate the mechanism of action for bactericidal activity against nonreplicating M. tuberculosis.
Main Methods:
- Assessed potency of multiple gyrase inhibitor classes against M. tuberculosis in various replication states.
- Evaluated bactericidal activity against M. tuberculosis in ex vivo rabbit caseum.
- Measured M. tuberculosis DNA gyrase supercoiling activity.
- Determined the ability of inhibitors to induce DNA double-strand breaks.
Main Results:
- Many gyrase inhibitors showed negligible activity against M. tuberculosis in caseum, unlike fluoroquinolones.
- While other inhibitors affected supercoiling, only fluoroquinolones cleaved double-stranded DNA at low micromolar concentrations.
- Fluoroquinolones demonstrated unique double-strand DNA cleavage activity.
Conclusions:
- Fluoroquinolones' ability to induce double-strand breaks may drive their potent bactericidal effect against nonreplicating M. tuberculosis.
- This mechanism is crucial for sterilizing lesions caused by persistent mycobacterial infections.
- Findings inform the development of novel chemotherapeutic strategies for TB.
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