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Updated: Jun 12, 2025

High-Throughput Cellular Profiling of Targeted Protein Degradation Compounds Using HiBiT CRISPR Cell Lines
Published on: November 9, 2020
Powering up targeted protein degradation through active and passive tumour-targeting strategies: Current and future
Janarthanan Venkatesan1, Dhanashree Murugan2, Kalaiarasu Lakshminarayanan1
1Department of Chemistry, School of Advanced Sciences (SAS), Vellore Institute of Technology (VIT), Vellore 632014, India; Drug Discovery Unit (DDU), Centre for Biomaterials, Cellular and Molecular Theranostics (CBCMT), Vellore Institute of Technology (VIT), Vellore 632014, India.
Abstract:
Targeted protein degradation (TPD) has emerged as a prominent and vital strategy for therapeutic intervention of cancers and other diseases. One such approach involves the exploration of proteolysis targeting chimeras (PROTACs) for the selective elimination of disease-causing proteins through the innate ubiquitin-proteasome pathway. Due to the unprecedented achievements of various PROTAC molecules in clinical trials, researchers have moved towards other physiological protein degradation approaches for the targeted degradation of abnormal proteins, including lysosome-targeting chimeras (LYTACs), autophagy-targeting chimeras (AUTACs), autophagosome-tethering compounds (ATTECs), molecular glue degraders, and other derivatives for their precise mode of action. Despite numerous advantages, these molecules face challenges in solubility, permeability, bioavailability, and potential off-target or on-target off-tissue effects. Thus, an urgent need arises to direct the action of these degrader molecules specifically against cancer cells, leaving the proteins of non-cancerous cells intact. Recent advancements in TPD have led to innovative delivery methods that ensure the degraders are delivered in a cell- or tissue-specific manner to achieve cell/tissue-selective degradation of target proteins. Such receptor-specific active delivery or nano-based passive delivery of the PROTACs could be achieved by conjugating them with targeting ligands (antibodies, aptamers, peptides, or small molecule ligands) or nano-based carriers. These techniques help to achieve precise delivery of PROTAC payloads to the target sites. Notably, the successful entry of a Degrader Antibody Conjugate (DAC), ORM-5029, into a phase 1 clinical trial underscores the therapeutic potential of these conjugates, including LYTAC-antibody conjugates (LACs) and aptamer-based targeted protein degraders. Further, using bispecific antibody-based degraders (AbTACs) and delivering the PROTAC pre-fused with E3 ligases provides a solution for cell type-specific protein degradation. Here, we highlighted the current advancements and challenges associated with developing new tumour-specific protein degrader approaches and summarized their potential as single agents or combination therapeutics for cancer.
Insights
Targeted protein degradation (TPD) offers new cancer therapies. Novel delivery methods enhance PROTACs and related degraders for cell-specific action, improving safety and efficacy.
Area of Science:
- Biochemistry and Molecular Biology
- Oncology
- Drug Discovery and Development
Background:
- Targeted protein degradation (TPD) is a key therapeutic strategy for cancer and other diseases.
- Proteolysis targeting chimeras (PROTACs) leverage the ubiquitin-proteasome system for selective protein elimination.
- Emerging TPD modalities include LYTACs, AUTACs, ATTECs, and molecular glues, each with unique mechanisms.
Purpose of the Study:
- To review advancements in developing tumor-specific protein degrader approaches.
- To address challenges in solubility, permeability, bioavailability, and off-target effects of degrader molecules.
- To highlight innovative delivery methods for cell- and tissue-specific protein degradation in cancer therapy.
Main Methods:
- Exploration of various TPD strategies beyond PROTACs.
- Development of cell/tissue-specific delivery systems for degrader molecules.
- Conjugation of degraders with targeting ligands (antibodies, aptamers, peptides) or nano-carriers.
- Utilizing bispecific antibody-based degraders (AbTACs) and pre-fused E3 ligase constructs.
Main Results:
- Innovative delivery methods enable precise targeting of cancer cells, minimizing effects on healthy tissues.
- Degrader Antibody Conjugates (DACs) like ORM-5029 show clinical promise.
- LYTAC-antibody conjugates (LACs) and aptamer-based degraders demonstrate therapeutic potential.
- Bispecific antibody-based degraders and E3 ligase fusion offer solutions for cell-type specificity.
Conclusions:
- Targeted protein degradation approaches are rapidly advancing, with a focus on enhancing specificity.
- Innovative delivery strategies are crucial for overcoming limitations and improving the safety profile of TPD therapeutics.
- These targeted degraders hold significant potential as monotherapies or in combination treatments for cancer.
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