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Published on: January 22, 2019
Integrating protein interaction and pathway crosstalk network reveals a promising therapeutic approach for psoriasis
Masoumeh Farahani1, Reza M Robati2,3, Mostafa Rezaei-Tavirani4
1Skin Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Abstract:
Psoriasis is a complex inflammatory skin disease manifested by altered proliferation and differentiation of keratinocytes with dysfunctional apoptosis. This study aimed to identify regulatory factors and comprehend the underlying mechanisms of inefficient apoptosis to open up promising therapeutic approaches. Incorporating human protein interactions, apoptosis proteins, and physical relationships of psoriasis-apoptosis proteins helped us to generate a psoriasis-apoptosis interaction (SAI) network. Subsequently, topological and functional analyses of the SAI network revealed effective proteins, functional modules, hub motifs, dysregulated pathways and transcriptional gene regulatory factors. Network pharmacology, molecular docking and molecular dynamics simulation methods identified the potential drug-target interactions. RELA, MAPK1, MAPK3, MMP9, IL1B, AKT1 and STAT1 were revealed as effective proteins. The MAPK1-MAPK3-RELA motif was identified as a hub regulator in the crosstalk between 41 pathways. Among all pathways, "lipid and atherosclerosis" was found to be the predominant pathway. Acetylcysteine, arsenic-trioxide, β-elemene, bortezomib and curcumin were identified as potential drugs to inhibit pathway crosstalk. Experimental verifications were performed using the literature search, GSE13355 and GSE14905 microarray datasets. Drug-protein-pathway interactions associated with apoptosis were deciphered. These findings highlight the role of hub motif-mediated pathway-pathway crosstalk associated with apoptosis in the complexity of psoriasis and suggest crosstalk inhibition as an effective therapeutic approach.
Insights
This study reveals key protein interactions and pathways involved in psoriasis, identifying a crucial hub motif that drives disease complexity through pathway crosstalk. Targeting this crosstalk offers a promising therapeutic strategy for psoriasis.
Area of Science:
- Dermatology
- Immunology
- Computational Biology
Background:
- Psoriasis is a complex inflammatory skin disease characterized by abnormal keratinocyte proliferation, differentiation, and apoptosis.
- Understanding the mechanisms of inefficient apoptosis is crucial for developing novel therapeutic strategies for psoriasis.
Purpose of the Study:
- To identify regulatory factors and elucidate the mechanisms of inefficient apoptosis in psoriasis.
- To generate a psoriasis-apoptosis interaction (SAI) network to uncover potential drug targets and therapeutic approaches.
Main Methods:
- Construction and analysis of a psoriasis-apoptosis interaction (SAI) network using human protein interactions.
- Application of network pharmacology, molecular docking, and molecular dynamics simulations to identify drug-target interactions.
- Analysis of microarray datasets (GSE13355, GSE14905) and literature for experimental verification.
Main Results:
- Identification of effective proteins including RELA, MAPK1, MAPK3, MMP9, IL1B, AKT1, and STAT1.
- Discovery of the MAPK1-MAPK3-RELA motif as a central regulator of crosstalk among 41 pathways, with 'lipid and atherosclerosis' being predominant.
- Identification of potential therapeutic drugs such as acetylcysteine, arsenic-trioxide, β-elemene, bortezomib, and curcumin.
Conclusions:
- Hub motif-mediated pathway-pathway crosstalk, particularly involving apoptosis, significantly contributes to psoriasis complexity.
- Inhibiting this crosstalk presents a viable and effective therapeutic approach for managing psoriasis.
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