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Updated: Jun 11, 2025

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
NR0B2 Is a Key Factor for Gastric Diseases: A GEO Database Analysis Combined with Drug-Target Mendelian Randomization
Zhengwen Li1, Lijia Xu1, Dongliang Huang1
1School of Pharmacy, Chengdu University, 2025 Chengluo Avenue, Chengdu 610106, China.
Abstract:
Small Heterodimer Partner (SHP; NR0B2) is an orphan receptor that acts as a transcriptional regulator, controlling various metabolic processes, and is a potential therapeutic target for cancer. Examining the correlation between the expression of NR0B2 and the risk of gastric diseases could open a new path for treatment and drug development. The Gene Expression Omnibus (GEO) database was utilized to explore NR0B2 gene expression profiles in gastric diseases. Co-expressed genes were identified through Weighted Correlation Network Analysis (WGCNA), and GO enrichment was performed to identify potential pathways. The Xcell method was employed to analyze immune infiltration relationships. To determine the potential causal relationship between NR0B2 expression and gastric diseases, we identified six single-nucleotide polymorphisms (SNPs) as a proxy for NR0B2 expression located within 100 kilobases of NR0B2 and which are associated with triglyceride homeostasis and performed drug-target Mendelian randomization (MR). Bioinformatics analysis revealed that NR0B2 expression levels were reduced in gastric cancer and increased in gastritis. GO analysis and Gene Set Enrichment Analysis (GSEA) showed that NR0B2 is widely involved in oxidation-related processes. Immune infiltration analyses found that NR0B2 was associated with Treg. Prognostic analyses showed that a low expression of NR0B2 is a risk factor for the poor prognoses of gastric cancer. MR analyses revealed that NR0B2 expression is associated with a risk of gastric diseases (NR0B2 vs. gastric cancer, p = 0.006, OR: 0.073, 95%CI: 0.011-0.478; NR0B2 vs. gastric ulcer, p = 0.03, OR: 0.991, 95%CI: 0.984-0.999; NR0B2 vs. other gastritis, p = 0.006, OR:3.82, 95%CI: 1.468-9.942). Our study confirms the causal relationship between the expression of NR0B2 and the risk of gastric diseases, and highlights its role in the progression of gastric cancer. The present study opens new avenues for exploring the potential of drugs that either activate or inhibit the NR0B2 receptor in the treatment of gastric diseases.
Insights
Small Heterodimer Partner (SHP; NR0B2) expression is linked to gastric diseases, with lower levels in gastric cancer and higher levels in gastritis. This study confirms SHP
Area of Science:
- Genomics and Bioinformatics
- Molecular Biology
- Oncology
Background:
- Small Heterodimer Partner (SHP; NR0B2) is an orphan nuclear receptor regulating metabolic processes and a potential cancer therapeutic target.
- Investigating NR0B2's role in gastric diseases may reveal new treatment and drug development avenues.
Purpose of the Study:
- To explore the correlation between NR0B2 gene expression and the risk of gastric diseases.
- To identify potential therapeutic targets within NR0B2 pathways for gastric disease treatment.
Main Methods:
- Utilized the Gene Expression Omnibus (GEO) database for NR0B2 expression profiles in gastric diseases.
- Employed Weighted Correlation Network Analysis (WGCNA) for co-expressed genes and Gene Ontology (GO) enrichment analysis for pathway identification.
- Applied Xcell method for immune infiltration analysis and Mendelian Randomization (MR) to assess causal relationships.
Main Results:
- NR0B2 expression was reduced in gastric cancer and increased in gastritis.
- GO and Gene Set Enrichment Analysis (GSEA) indicated NR0B2's involvement in oxidation-related processes.
- Low NR0B2 expression correlated with poor gastric cancer prognosis and a causal relationship was established between NR0B2 expression and gastric disease risk.
Conclusions:
- Confirmed a causal link between NR0B2 expression and the risk of gastric diseases, including gastric cancer, ulcer, and gastritis.
- Highlighted NR0B2's role in gastric cancer progression and its association with Treg immune cells.
- Suggests NR0B2 as a potential therapeutic target for modulating gastric disease progression.
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