Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Residual Plots01:07

Residual Plots

4.5K
A residual plot is a statistical representation of data used to analyze correlation and regression results. It helps verify the requirements for drawing specific conclusions about correlation and regression. To obtain the residual plot, first, the residual for each data value is calculated, which is simply the vertical distance between the observed and the predicted value obtained from the regression equation.
When the residual values are plotted against the variable x, it is called a residual...
4.5K
Residuals and Least-Squares Property01:11

Residuals and Least-Squares Property

7.3K
The vertical distance between the actual value of y and the estimated value of y. In other words, it measures the vertical distance between the actual data point and the predicted point on the line
If the observed data point lies above the line, the residual is positive, and the line underestimates the actual data value for y. If the observed data point lies below the line, the residual is negative, and the line overestimates the actual data value for y.
The process of fitting the best-fit...
7.3K
Introduction to R01:11

Introduction to R

254
R is a powerful software environment for statistical computing and graphics. Originating as an implementation of the S language, developed at Bell Laboratories, R has evolved into a robust, open-source statistical software favored by statisticians and data scientists worldwide. Its comprehensive suite includes data manipulation, calculation, and graphical display capabilities, making it versatile for data analysis and visualization. Its programming language is at the core of R's...
254
Parametric Survival Analysis: Weibull and Exponential Methods01:14

Parametric Survival Analysis: Weibull and Exponential Methods

374
Parametric survival analysis models survival data by assuming a specific probability distribution for the time until an event occurs. The Weibull and exponential distributions are two of the most commonly used methods in this context, due to their versatility and relatively straightforward application.
Weibull Distribution
The Weibull distribution is a flexible model used in parametric survival analysis. It can handle both increasing and decreasing hazard rates, depending on its shape parameter...
374
Statistical Analysis: Overview01:11

Statistical Analysis: Overview

6.2K
When we take repeated measurements on the same or replicated samples, we will observe inconsistencies in the magnitude. These inconsistencies are called errors. To categorize and characterize these results and their errors, the researcher can use statistical analysis to determine the quality of the measurements and/or suitability of the methods.
One of the most commonly used statistical quantifiers is the mean, which is the ratio between the sum of the numerical values of all results and the...
6.2K
Introduction To Survival Analysis01:18

Introduction To Survival Analysis

188
Survival analysis is a statistical method used to study time-to-event data, where the "event" might represent outcomes like death, disease relapse, system failure, or recovery. A unique feature of survival data is censoring, which occurs when the event of interest has not been observed for some individuals during the study period. This requires specialized techniques to handle incomplete data effectively.
The primary goal of survival analysis is to estimate survival time—the time...
188

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Who Is Not Linking to HIV Care in Tennessee - the Benefits of an Intersectional Approach.

Journal of racial and ethnic health disparities·2021
Same author

Brief Report: Weight Gain in Persons With HIV Switched From Efavirenz-Based to Integrase Strand Transfer Inhibitor-Based Regimens.

Journal of acquired immune deficiency syndromes (1999)·2017
Same author

Impact of low-level viremia on clinical and virological outcomes in treated HIV-1-infected patients.

AIDS (London, England)·2015
Same author

Acute clearance of human metapneumovirus occurs independently of natural killer cells.

Journal of virology·2014
Same author

Sorbitol induces apoptosis of human colorectal cancer cells via p38 MAPK signal transduction.

Oncology letters·2014
Same author

Role of resonance absorption in terahertz radiation generation from solid targets.

Optics express·2014
Same journal

ebnm: An R Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families.

Journal of statistical software·2026
Same journal

Optimum Allocation for Adaptive Multi-Wave Sampling in R: The R Package optimall.

Journal of statistical software·2025
Same journal

BoXHED2.0: Scalable Boosting of Dynamic Survival Analysis.

Journal of statistical software·2025
Same journal

Probabilistic Estimation and Projection of the Annual Total Fertility Rate Accounting for Past Uncertainty: A Major Update of the bayesTFR R Package.

Journal of statistical software·2024
Same journal

Regression Modeling for Recurrent Events Possibly with an Informative Terminal Event Using R Package reReg.

Journal of statistical software·2024
Same journal

Application of Equal Local Levels to Improve Q-Q Plot Testing Bands with R Package qqconf.

Journal of statistical software·2023
See all related articles

Related Experiment Video

Updated: Jun 11, 2025

Competing-Risk Nomogram for Predicting Cancer-Specific Survival in Multiple Primary Colorectal Cancer Patients after Surgery
06:46

Competing-Risk Nomogram for Predicting Cancer-Specific Survival in Multiple Primary Colorectal Cancer Patients after Surgery

Published on: September 27, 2024

223

PResiduals: An R Package for Residual Analysis Using Probability-Scale Residuals.

Qi Liu1, Bryan Shepherd2, Chun Li3

  • 1Merck & CO., Inc.

Journal of Statistical Software
|October 7, 2024
PubMed
Summary
This summary is machine-generated.

The PResiduals R package offers probability-scale residuals for robust model diagnostics across diverse data types. This tool enhances statistical analysis by providing reliable methods for model evaluation and association testing.

Keywords:
associationcorrelationcovariate-adjustmentdiagnosticsrank statisticsresidual

More Related Videos

An R-Based Landscape Validation of a Competing Risk Model
05:37

An R-Based Landscape Validation of a Competing Risk Model

Published on: September 16, 2022

2.0K
Development of an Individual-Tree Basal Area Increment Model using a Linear Mixed-Effects Approach
04:35

Development of an Individual-Tree Basal Area Increment Model using a Linear Mixed-Effects Approach

Published on: July 3, 2020

3.3K

Related Experiment Videos

Last Updated: Jun 11, 2025

Competing-Risk Nomogram for Predicting Cancer-Specific Survival in Multiple Primary Colorectal Cancer Patients after Surgery
06:46

Competing-Risk Nomogram for Predicting Cancer-Specific Survival in Multiple Primary Colorectal Cancer Patients after Surgery

Published on: September 27, 2024

223
An R-Based Landscape Validation of a Competing Risk Model
05:37

An R-Based Landscape Validation of a Competing Risk Model

Published on: September 16, 2022

2.0K
Development of an Individual-Tree Basal Area Increment Model using a Linear Mixed-Effects Approach
04:35

Development of an Individual-Tree Basal Area Increment Model using a Linear Mixed-Effects Approach

Published on: July 3, 2020

3.3K

Area of Science:

  • Statistical modeling
  • Data analysis software

Background:

  • Traditional residual analysis methods have limitations with various outcome types and models.
  • Existing diagnostics may not be applicable in complex statistical scenarios.

Purpose of the Study:

  • Introduce the PResiduals R package for advanced residual analysis.
  • Provide a versatile tool for model diagnostics and association testing.

Main Methods:

  • Utilize probability-scale residuals, applicable to a wide range of outcome types and models.
  • Implement tests for conditional associations and covariate adjustment for Spearman's rank correlation.
  • Develop methods that are robust and efficient for orderable variables without requiring score assignment or transformation.

Main Results:

  • The PResiduals package offers a flexible approach to residual analysis.
  • Probability-scale residuals are well-defined even when other residuals fail.
  • The package facilitates robust and efficient conditional association tests.

Conclusions:

  • The PResiduals R package provides a valuable tool for statistical modeling and diagnostics.
  • Its probability-scale residuals offer advantages in robustness and applicability.
  • The package facilitates advanced data analysis for researchers.