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RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing
Published on: August 7, 2021
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A Broad Spectrum Lasso Peptide Antibiotic Targeting the Bacterial Ribosome.
Gerard Wright1, Manoj Jangra1, Dmitrii Travin2
1McMaster University.
Research Square
|October 7, 2024
Summary
Researchers discovered lariocidins, the first lasso peptides that target bacterial ribosomes. These novel antibiotics inhibit protein synthesis, offering a new scaffold for developing urgently needed antibacterial drugs.
Area of Science:
- Microbiology and Molecular Biology
- Natural Product Chemistry
- Antibiotic Discovery
Background:
- Lasso peptides are a class of ribosomally-synthesized and post-translationally modified peptides (RiPPs) with a unique knotted structure and known antibacterial activity.
- While lasso peptides target various bacterial mechanisms, none have been identified as ribosome inhibitors, a key target for antibiotics.
Purpose of the Study:
- To identify and characterize novel lasso peptides with antibacterial properties.
- To investigate the mechanism of action of these new compounds, specifically their effect on bacterial protein synthesis and the ribosome.
Main Methods:
- Isolation and characterization of lariocidin (LAR) and lariocidin B (LAR-B) from *Paenibacillus sp.* M2.
- Biochemical and structural analyses to determine the binding site and interactions with the bacterial ribosome.
- Genetic studies to understand the mechanism of inhibition and assess resistance potential.
- In vivo efficacy testing in a mouse model of *Acinetobacter baumannii* infection.
Main Results:
- Identification of lariocidins (LAR and LAR-B) with broad-spectrum antibacterial activity.
- Demonstration that lariocidins bind to a unique site on the small ribosomal subunit, inhibiting protein synthesis by interfering with translocation and inducing miscoding.
- Lariocidins are effective against pathogens, exhibit low resistance potential, show no human cell toxicity, and are potent in vivo.
Conclusions:
- Lariocidins represent the first class of lasso peptides found to target the bacterial ribosome.
- This discovery opens new avenues for developing alternative protein synthesis inhibitors.
- Lariocidins provide a promising new chemical scaffold for the development of novel antibacterial agents.
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