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Updated: Jun 11, 2025

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
The novel selective inhibitors of cyclin-dependent kinase 4/6: in vitro and in silico study
Ni Made Pitri Susanti1,2, Fransiska Kurniawan1, Sophi Damayanti1
1School of Pharmacy, Bandung Institute of Technology, Bandung, 40132, Indonesia.
Abstract:
One of the main regulators in the cell cycle is cyclin-dependent kinase 4 and 6 (CDK4/6). FDA has approved CDK4/6 inhibitors for the treatment of patients with metastatic breast cancer. However, the development of selective agents remains problematic due to the conservation of their ATP binding sites. In the previous in silico study, ZINC585292724, ZINC585292587, ZINC585291674, and ZINC585291474 have been identified as potential inhibitors. Therefore, the present study aimed to analyze the selectivity and inhibitory activity of the four compounds against CDK4/6 in vitro as well as determine the potential for their further development in silico. The in vitro results showed that the four compounds had good selectivity towards both kinases, due to their similar structure. In agreement with the in silico results, ZINC585291674 produced the best inhibitory activity against CDK4 and CDK6, with IC50 of 184.14 nM and 111.78 nM, respectively. Their ADMET profile were also similar to reference compound of Palbociclib. Based on this, ZINC585291674 can be used as a lead compound for further inhibitor development.
Insights
Four compounds were evaluated as potential cyclin-dependent kinase 4 and 6 (CDK4/6) inhibitors. ZINC585291674 demonstrated the best inhibitory activity and selectivity, showing promise for further development in breast cancer treatment.
Area of Science:
- Oncology
- Medicinal Chemistry
- Molecular Biology
Background:
- Cyclin-dependent kinase 4 and 6 (CDK4/6) are key cell cycle regulators.
- CDK4/6 inhibitors are FDA-approved for metastatic breast cancer.
- Developing selective CDK4/6 inhibitors is challenging due to conserved ATP binding sites.
Purpose of the Study:
- To analyze the in vitro selectivity and inhibitory activity of four previously identified potential CDK4/6 inhibitors.
- To further evaluate their development potential using in silico methods.
- To identify a lead compound for future drug development.
Main Methods:
- In vitro assays to assess selectivity and inhibitory activity against CDK4/6.
- In silico analysis to predict development potential.
- ADMET profiling compared to Palbociclib.
Main Results:
- All four compounds exhibited good selectivity for CDK4/6 due to structural similarity.
- ZINC585291674 showed the most potent inhibition with IC50 values of 184.14 nM (CDK4) and 111.78 nM (CDK6).
- The compounds' ADMET profiles were comparable to the reference drug Palbociclib.
Conclusions:
- ZINC585291674 is a promising lead compound for developing novel CDK4/6 inhibitors.
- The study validates the potential of ZINC585291674 for further preclinical and clinical development.
- This research contributes to the ongoing effort to find more effective treatments for breast cancer.
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