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Updated: Jun 10, 2025

Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
Rewriting cellular fate: epigenetic interventions in obesity and cellular programming
1Department of Cardiology, Shanghai East Hospital, School of Medicine, Tongji University, Jimo Road 150, Shanghai, 200120, China.
Abstract:
External constraints, such as development, disease, and environment, can induce changes in epigenomic patterns that may profoundly impact the health trajectory of fetuses and neonates into adulthood, influencing conditions like obesity. Epigenetic modifications encompass processes including DNA methylation, covalent histone modifications, and RNA-mediated regulation. Beyond forward cellular differentiation (cell programming), terminally differentiated cells are reverted to a pluripotent or even totipotent state, that is, cellular reprogramming. Epigenetic modulators facilitate or erase histone and DNA modifications both in vivo and in vitro during programming and reprogramming. Noticeably, obesity is a complex metabolic disorder driven by both genetic and environmental factors. Increasing evidence suggests that epigenetic modifications play a critical role in the regulation of gene expression involved in adipogenesis, energy homeostasis, and metabolic pathways. Hence, we discuss the mechanisms by which epigenetic interventions influence obesity, focusing on DNA methylation, histone modifications, and non-coding RNAs. We also analyze the methodologies that have been pivotal in uncovering these epigenetic regulations, i.e., Large-scale screening has been instrumental in identifying genes and pathways susceptible to epigenetic control, particularly in the context of adipogenesis and metabolic homeostasis; Single-cell RNA sequencing (scRNA-seq) provides a high-resolution view of gene expression patterns at the individual cell level, revealing the heterogeneity and dynamics of epigenetic regulation during cellular differentiation and reprogramming; Chromatin immunoprecipitation (ChIP) assays, focused on candidate genes, have been crucial for characterizing histone modifications and transcription factor binding at specific genomic loci, thereby elucidating the epigenetic mechanisms that govern cellular programming; Somatic cell nuclear transfer (SCNT) and cell fusion techniques have been employed to study the epigenetic reprogramming accompanying cloning and the generation of hybrid cells with pluripotent characteristics, etc. These approaches have been instrumental in identifying specific epigenetic marks and pathways implicated in obesity, providing a foundation for developing targeted therapeutic interventions. Understanding the dynamic interplay between epigenetic regulation and cellular programming is crucial for advancing mechanism and clinical management of obesity.
Insights
Epigenetic modifications influence obesity by altering gene expression. Understanding these changes in DNA methylation, histone modifications, and non-coding RNAs is key for developing targeted obesity interventions.
Area of Science:
- Epigenetics and Developmental Biology
- Metabolic Disorders Research
- Cellular Reprogramming Studies
Background:
- External factors like environment and disease induce epigenomic changes impacting health trajectories.
- Obesity is a complex metabolic disorder influenced by genetics and environment.
- Epigenetic modifications are increasingly recognized for their role in regulating adipogenesis and energy homeostasis.
Purpose of the Study:
- To discuss mechanisms of epigenetic interventions in obesity.
- To focus on DNA methylation, histone modifications, and non-coding RNAs in obesity regulation.
- To analyze methodologies crucial for uncovering epigenetic regulations in obesity.
Main Methods:
- Large-scale screening for identifying epigenetically controlled genes and pathways.
- Single-cell RNA sequencing (scRNA-seq) for high-resolution gene expression analysis.
- Chromatin immunoprecipitation (ChIP) assays for characterizing histone modifications and transcription factor binding.
- Somatic cell nuclear transfer (SCNT) and cell fusion for studying epigenetic reprogramming.
Main Results:
- Epigenetic modifications play a critical role in regulating adipogenesis and metabolic pathways.
- Methodologies like scRNA-seq and ChIP have identified specific epigenetic marks and pathways in obesity.
- These approaches provide a foundation for targeted therapeutic interventions for obesity.
Conclusions:
- Understanding the interplay between epigenetic regulation and cellular programming is vital for obesity research.
- Epigenetic interventions show promise for advancing the mechanism and clinical management of obesity.
- Targeting epigenetic mechanisms offers a novel therapeutic avenue for obesity.
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