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Updated: Jun 10, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Elevated Circulating Levels of Gut Microbe-Derived Trimethylamine N-Oxide Are Associated with Systemic Sclerosis
Karen J Ho1, Lutfiyya N Muhammad2, Linh Ngo Khanh3
1Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Abstract:
Background/Objectives: Alterations in fecal microbial communities in patients with systemic sclerosis (SSc) are common, but the clinical significance of this observation is poorly understood. Gut microbial production of trimethylamine (TMA), and its conversion by the host to trimethylamine N-oxide (TMAO), has clinical and mechanistic links to cardiovascular and renal diseases. Direct provision of TMAO has been shown to promote fibrosis and vascular injury, hallmarks of SSc. We sought to determine levels of TMAO and related metabolites in SSc patients and investigate associations between the metabolite levels with disease features. Methods: This is an observational case:control study. Adults with SSc (n = 200) and non-SSc controls (n = 400) were matched for age, sex, indices of renal function, diabetes mellitus, and cardiovascular disease. Serum TMAO, choline, betaine, carnitine, γ-butyrobetaine, and crotonobetaine were measured using stable isotope dilution liquid chromatography tandem mass spectrometry. Results: Median TMAO concentration was higher (p = 0.020) in SSc patients (3.31 [interquartile range 2.18, 5.23] µM) relative to controls (2.85 [IQR 1.88, 4.54] µM). TMAO was highest among obese and male SSc participants compared to all other groups. Following adjustment for sex, BMI, age, race, and eGFR in a quantile regression model, elevated TMAO levels remained associated with SSc at each quantile of TMAO. Conclusions: Patients with SSc have increased circulating levels of TMAO independent of comorbidities including age, sex, renal function, diabetes mellitus, and cardiovascular disease. As a potentially modifiable factor, further studies examining the link between TMAO and SSc disease severity and course are warranted.
Insights
Patients with systemic sclerosis (SSc) show higher levels of trimethylamine N-oxide (TMAO), a metabolite linked to cardiovascular disease. This finding suggests TMAO may play a role in SSc pathogenesis, independent of other health conditions.
Area of Science:
- Metabolomics
- Systemic Sclerosis Pathophysiology
- Gut Microbiome Research
Background:
- Fecal microbial alterations are common in systemic sclerosis (SSc), but their clinical significance is unclear.
- Gut microbial metabolite trimethylamine N-oxide (TMAO) is linked to cardiovascular and renal diseases and promotes fibrosis.
- TMAO may contribute to SSc pathogenesis, characterized by fibrosis and vascular injury.
Purpose of the Study:
- To determine circulating trimethylamine N-oxide (TMAO) and related metabolite levels in SSc patients.
- To investigate associations between TMAO levels and SSc disease features.
- To assess TMAO levels in SSc patients compared to matched controls.
Main Methods:
- Observational case-control study with 200 SSc patients and 400 controls.
- Participants matched for age, sex, renal function, diabetes, and cardiovascular disease.
- Serum TMAO and related metabolites measured using liquid chromatography tandem mass spectrometry.
Main Results:
- SSc patients had significantly higher median serum TMAO concentrations than controls.
- Elevated TMAO levels were associated with SSc, even after adjusting for comorbidities.
- TMAO levels were highest in obese and male SSc participants.
Conclusions:
- Systemic sclerosis patients exhibit increased circulating TMAO levels independently of comorbidities.
- TMAO may represent a potentially modifiable factor in SSc.
- Further research is warranted to explore the link between TMAO and SSc disease severity and progression.

