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Updated: Jun 10, 2025

Author Spotlight: Decoding DNA Repair by Extrachromosomal NHEJ Assay and HR Assays
Published on: February 2, 2024
Crosstalk between BER and NHEJ in XRCC4-Deficient Cells Depending on hTERT Overexpression
Svetlana V Sergeeva1,2, Polina S Loshchenova1,2, Dmitry Yu Oshchepkov1
1Institute of Cytology and Genetics, Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia.
Abstract:
Targeting DNA repair pathways is an important strategy in anticancer therapy. However, the unrevealed interactions between different DNA repair systems may interfere with the desired therapeutic effect. Among DNA repair systems, BER and NHEJ protect genome integrity through the entire cell cycle. BER is involved in the repair of DNA base lesions and DNA single-strand breaks (SSBs), while NHEJ is responsible for the repair of DNA double-strand breaks (DSBs). Previously, we showed that BER deficiency leads to downregulation of NHEJ gene expression. Here, we studied BER's response to NHEJ deficiency induced by knockdown of NHEJ scaffold protein XRCC4 and compared the knockdown effects in normal (TIG-1) and hTERT-modified cells (NBE1). We investigated the expression of the XRCC1, LIG3, and APE1 genes of BER and LIG4; the Ku70/Ku80 genes of NHEJ at the mRNA and protein levels; as well as p53, Sp1 and PARP1. We found that, in both cell lines, XRCC4 knockdown leads to a decrease in the mRNA levels of both BER and NHEJ genes, though the effect on protein level is not uniform. XRCC4 knockdown caused an increase in p53 and Sp1 proteins, but caused G1/S delay only in normal cells. Despite the increased p53 protein, p21 did not significantly increase in NBE1 cells with overexpressed hTERT, and this correlated with the absence of G1/S delay in these cells. The data highlight the regulatory function of the XRCC4 scaffold protein and imply its connection to a transcriptional regulatory network or mRNA metabolism.
Insights
Knocking down XRCC4, a DNA repair protein, reduces expression of both BER and NHEJ genes. This impacts cell cycle progression differently in normal versus cancer-related cells, revealing XRCC4
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- DNA repair pathways, including Base Excision Repair (BER) and Non-Homologous End Joining (NHEJ), are crucial for maintaining genome integrity.
- Interactions between DNA repair systems can influence anticancer therapy efficacy.
- Previous research indicated that BER deficiency downregulates NHEJ gene expression.
Purpose of the Study:
- To investigate the impact of NHEJ deficiency, specifically XRCC4 knockdown, on BER pathway gene expression.
- To compare the cellular response to XRCC4 knockdown in normal (TIG-1) and hTERT-modified (NBE1) cells.
- To analyze the effects on key DNA repair and cell cycle regulatory genes at both mRNA and protein levels.
Main Methods:
- Xenograft models were not used in this study.
- Cell lines (TIG-1 and NBE1) underwent XRCC4 knockdown.
- Quantitative PCR and Western blotting were employed to assess gene and protein expression levels of BER (XRCC1, LIG3, APE1), NHEJ (LIG4, Ku70/Ku80), and regulatory factors (p53, Sp1, PARP1).
- Cell cycle progression was monitored.
Main Results:
- XRCC4 knockdown decreased mRNA levels of both BER and NHEJ genes in both cell lines.
- Protein level changes were not uniform across all investigated genes.
- XRCC4 knockdown increased p53 and Sp1 protein levels.
- G1/S phase delay was observed in normal cells but not in hTERT-modified cells, despite increased p53.
- p21 levels did not significantly increase in NBE1 cells, correlating with the absence of G1/S delay.
Conclusions:
- The XRCC4 scaffold protein plays a significant regulatory role in DNA repair pathways.
- XRCC4's function may be linked to transcriptional regulation or mRNA metabolism.
- Differential cellular responses to NHEJ deficiency highlight the complexity of DNA repair interactions in cancer therapy.
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