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Updated: Jun 10, 2025

From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tü6028
Published on: January 13, 2017
Hybrid Type I and II Polyketide Synthases Yield Distinct Aromatic Polyketides
Li Ya Zhao1, Jing Shi1, Zhao Yang Xu1
1State Key Laboratory of Pharmaceutical Biotechnology, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Life Sciences, Nanjing University, Nanjing 210023, China.
Researchers discovered spirocycline A, a rare hybrid aromatic polyketide, synthesized by a novel combination of type I and type II polyketide synthases (PKSs). This finding opens new avenues for discovering and engineering complex polyketides.
Area of Science:
- Microbiology
- Biochemistry
- Synthetic Biology
Background:
- Bacterial aromatic polyketides are synthesized by type II polyketide synthases (PKSs), with some developed into clinical drugs.
- Hybrid polyketides synthesized by both type I and type II PKSs are exceptionally rare in nature.
Purpose of the Study:
- To report the discovery and characterization of a novel hybrid polyketide, spirocycline A.
- To elucidate the unique biosynthetic pathway involving both type I and type II PKSs.
Main Methods:
- Extensive bioinformatics analysis to identify a unique gene cluster.
- Characterization of the hybrid polyketide spirocycline A.
- Biosynthetic studies using identified enzymes and gene clusters.
Main Results:
- Discovery of a gene cluster encoding modular type I PKS, type II PKS, and KAS III.
- Characterization of spirocycline A, a hybrid aromatic polyketide with a unique starter unit and four spirocycles, forming a dimer.
- Elucidation of a novel biosynthetic pathway involving collaborative action of type I PKS, KAS III, and redox enzymes.
Conclusions:
- Spirocycline A represents a rare class of hybrid aromatic polyketides.
- The identified gene cluster and biosynthetic pathway offer new strategies for discovering and engineering novel polyketides.
- The enzymes involved present potential tools for bioengineering hybrid polyketides.
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