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aXonica: A support package for MRI based Neuroimaging.

Bilal Wajid1,2, Momina Jamil2, Fahim Gohar Awan3

  • 1Dhanani School of Science and Engineering, Habib University, Karachi, Pakistan.

Biotechnology Notes (Amsterdam, Netherlands)
|October 17, 2024
PubMed
Summary
This summary is machine-generated.

Researchers need easier ways to build software workstations for Magnetic Resonance Imaging (MRI) analysis. A new package, aXonica, offers 130 tools and automates software installation, simplifying neuroimaging research.

Keywords:
BioimagingMagnetic resonance imaging (MRI)NeuroimagingUbuntu

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Area of Science:

  • Neuroimaging
  • Computational Neuroscience
  • Medical Imaging Software

Background:

  • Magnetic Resonance Imaging (MRI) analysis requires complex software pipelines.
  • Establishing these software workstations is challenging for life science researchers due to non-user-friendly software.
  • Existing solutions have limitations in scope, flexibility, or cost.

Purpose of the Study:

  • To present a comprehensive survey of MRI-based neuroimaging tools.
  • To introduce 'aXonica,' a novel support package designed to simplify software workstation setup for MRI neuroimaging.
  • To address the need for automated software installation and dependency resolution in neuroimaging research.

Main Methods:

  • Conducted an extensive survey of 317 MRI-based neuroimaging tools published in the last decade.
  • Developed 'aXonica,' an MRI-based neuroimaging support package utilizing a GUI front-end and shell-scripted back-end.
  • aXonica automatically resolves software dependencies and installs selected tools.

Main Results:

  • Identified and surveyed 317 MRI neuroimaging tools.
  • aXonica provides 130 applications, exceeding the number of tools in comparable packages like NeuroDebian and BIDS Apps.
  • aXonica supports user selection of software, automatic dependency resolution, and installation.

Conclusions:

  • aXonica simplifies the creation and updating of software workstations for MRI-based neuroimaging.
  • This package serves as a valuable resource for researchers and educators in the field.
  • Automated software installation accelerates the process of building and maintaining neuroimaging laboratories.