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Updated: Jun 10, 2025

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
Published on: January 16, 2016
Efficient machine learning approach for accurate free-energy profiles and kinetic rates
Timothée Devergne1, Leon Huet2, Fabio Pietrucci2
1<a href="https://ror.org/05abgg682">Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie</a>, UMR 7590 CNRS, <a href="https://ror.org/02en5vm52">Sorbonne Université</a>, Muséum National d'Histoire Naturelle - Paris 75005, France; Atomistic Simulations, <a href="https://ror.org/042t93s57">Italian Institute of Technology</a>, 16142 Genoa, Italy; and Computational Statistics and Machine Learning, <a href="https://ror.org/042t93s57">Italian Institute of Technology</a>, 16142 Genoa, Italy.
Abstract:
The computational exploration of reactive processes is challenging due to the requirement of thorough sampling across the free energy landscape using accurate ab initio methods. To address these constraints, machine learning potentials are employed, yet their training for this kind of problem is still a laborious and tedious task. In this study, we present an efficient approach to train these potentials by cleverly using a single batch of unbiased trajectories that avoid the pitfalls of trajectories artificially biased along a suboptimal collective variable. This strategy, when integrated with current enhanced sampling techniques, allows to obtain free energy profiles and kinetic rates of ab initio quality, yet dramatically reducing the computational cost.
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