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Gibbs Free Energy02:39

Gibbs Free Energy

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One of the challenges of using the second law of thermodynamics to determine if a process is spontaneous is that it requires measurements of the entropy change for the system and the entropy change for the surroundings. An alternative approach involving a new thermodynamic property defined in terms of system properties only was introduced in the late nineteenth century by American mathematician Josiah Willard Gibbs. This new property is called the Gibbs free energy (G) (or simply the free...
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The free energy change for a reaction that occurs under the standard conditions of 1 bar pressure and at 298 K is called the standard free energy change. Since free energy is a state function, its value depends only on the conditions of the initial and final states of the system. A convenient and common approach to the calculation of free energy changes for physical and chemical reactions is by use of widely available compilations of standard state thermodynamic data. One method involves the...
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The spontaneity of a process depends upon the temperature of the system. Phase transitions, for example, will proceed spontaneously in one direction or the other depending upon the temperature of the substance in question. Likewise, some chemical reactions can also exhibit temperature-dependent spontaneities. To illustrate this concept, the equation relating free energy change to the enthalpy and entropy changes for the process is considered:
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In the quest to identify a property that may reliably predict the spontaneity of a process, a promising candidate has been identified: entropy. Scientists refer to the measure of randomness or disorder within a system as entropy. High entropy means high disorder and low energy. To better understand entropy, think of a student’s bedroom. If no energy or work were put into it, the room would quickly become messy. It would exist in a very disordered state, one of high entropy. Energy must be...
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The spontaneity of a process depends upon the temperature of the system. Phase transitions, for example, will proceed spontaneously in one direction or the other depending upon the temperature of the substance in question. Likewise, some chemical reactions can also exhibit temperature-dependent spontaneities. To illustrate this concept, the equation relating free energy change to the enthalpy and entropy changes for the process is considered:
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How can we compare the energy that releases from one reaction to that of another reaction? We use a measurement of free energy to quantitate these energy transfers. Scientists call this free energy Gibbs free energy (abbreviated with the letter G) after Josiah Willard Gibbs, the scientist who developed the measurement. According to the second law of thermodynamics, all energy transfers involve losing some energy in an unusable form such as heat, resulting in entropy. Gibbs free energy...
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Time-asymmetric fluctuation theorem and efficient free-energy estimation.

Adrianne Zhong1,2, Ben Kuznets-Speck3,4, Michael R DeWeese1,2,5

  • 1Department of Physics, <a href="https://ror.org/01an7q238">University of California, Berkeley</a>, Berkeley, California 94720, USA.

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Summary
This summary is machine-generated.

Calculating free-energy differences (ΔF) is crucial for drug discovery. This study introduces an efficient, neural-network-free algorithm that significantly reduces errors in ΔF estimation using a novel work definition and fluctuation theorem.

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Area of Science:

  • Statistical mechanics
  • Computational physics
  • Physical chemistry

Background:

  • Computing free-energy differences (ΔF) in high-dimensional systems is challenging.
  • Accurate ΔF calculation is vital for applications like drug discovery.
  • An unconventional work definition by Vaikuntanathan and Jarzynski (2008) satisfies a microscopic fluctuation theorem.

Purpose of the Study:

  • To demonstrate the utility of a time-asymmetric microscopic fluctuation theorem for free-energy estimation.
  • To develop an efficient and simple algorithm for calculating ΔF.
  • To improve upon existing methods for free-energy calculations.

Main Methods:

  • Utilized an unconventional definition of work satisfying a microscopic fluctuation theorem.
  • Employed counterdiabatic protocols for zero-variance work measurements.
  • Developed a neural-network-free adaptive time-asymmetric protocol optimization algorithm.

Main Results:

  • The developed algorithm yields ΔF estimates with significantly lower mean squared error compared to standard methods.
  • Demonstrated orders of magnitude improvement in accuracy over generic linear interpolation protocols.
  • Showcased the effectiveness of the time-asymmetric fluctuation theorem for efficient free-energy estimation.

Conclusions:

  • The novel adaptive protocol optimization algorithm provides a highly efficient and accurate method for free-energy estimation.
  • This approach offers a practical alternative to complex and computationally expensive methods.
  • The findings have significant implications for accelerating drug discovery and other fields requiring precise free-energy calculations.