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USEARCH 12: Open-source software for sequencing analysis in bioinformatics and microbiome.

Yuanping Zhou1, Yong-Xin Liu2, Xuemeng Li1

  • 1Zhanjiang Key Laboratory of Human Microecology and Clinical Translation Research, The Marine Biomedical Research Institute, College of Basic Medicine Guangdong Medical University Zhanjiang China.

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This summary is machine-generated.

The USEARCH v12 bioinformatics software is now open source, empowering the microbiome research community. This move, alongside artificial intelligence advancements, will improve microbiome research infrastructure.

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Area of Science:

  • Bioinformatics
  • Microbiome Research
  • Computational Biology

Background:

  • The USEARCH v12 software is a widely recognized tool in bioinformatics.
  • Open-sourcing established software facilitates community-driven development and innovation.
  • Advancements in artificial intelligence (AI) are increasingly impacting scientific research infrastructure.

Purpose of the Study:

  • To announce the open-sourcing of USEARCH v12.
  • To highlight the implications of this open-source release for the microbiome research community.
  • To discuss the synergistic potential of open-source software and AI in advancing microbiome research.

Main Methods:

  • The study reports on the open-sourcing of existing bioinformatic software (USEARCH v12).
  • It discusses the impact of open-source principles on software development within a scientific field.
  • It considers the role of artificial intelligence in enhancing research infrastructure.

Main Results:

  • The bioinformatic software USEARCH v12 has been made open source.
  • This action is expected to stimulate the development of new bioinformatic tools by the microbiome research community.
  • The integration of open-source practices and AI is poised to strengthen the foundation for microbiome research.

Conclusions:

  • The open-sourcing of USEARCH v12 is a significant event for microbiome research.
  • It encourages collaborative development and innovation in bioinformatic software.
  • The convergence of open-source software and AI promises a more robust infrastructure for future microbiome studies.