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Extraction of Cofactor F420 for Analysis of Polyglutamate Tail Length from Methanogenic Pure Cultures and Environmental Samples
Published on: October 14, 2021
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Ethane-oxidising archaea couple CO2 generation to F420 reduction
Olivier N Lemaire1, Gunter Wegener1,2,3, Tristan Wagner4,5
1Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359, Bremen, Germany.
Nature Communications
|October 21, 2024
Summary
Marine archaea use anaerobic alkane oxidation to process hydrocarbons. This study reveals their CO2-forming enzymes deliver electrons to the F420 cofactor, not ferredoxin, enabling ethanotrophy.
Area of Science:
- Microbiology
- Biochemistry
- Environmental Science
Background:
- Anaerobic oxidation of alkanes is crucial for mitigating oceanic hydrocarbon seeps.
- Marine archaea rely on sulfate-reducing bacteria for electron transfer during alkane oxidation.
- Archaeal CO2-forming enzymes are typically assumed to couple to ferredoxin reduction.
Purpose of the Study:
- To investigate the molecular mechanisms of CO2 generation during anaerobic ethane oxidation.
- To characterize the CO dehydrogenase and formylmethanofuran dehydrogenase from Candidatus Ethanoperedens thermophilum.
- To elucidate the electron transfer pathways in ethanotrophic archaea.
Main Methods:
- Biochemical assays on purified native enzymes.
- X-ray crystallography to determine enzyme complex structures.
- Metagenome mining for genomic context.
Main Results:
- CO dehydrogenase and formylmethanofuran dehydrogenase deliver electrons to the F420 cofactor.
- Both enzymes possess electronic bridges linking oxidation centers to a flavin-dependent F420 reductase.
- Robust coupled F420-reductase activities were observed, distinct from related organisms.
Conclusions:
- A novel model proposes electron delivery to F420 during catabolic oxidation in this organism.
- This pathway facilitates indirect electron transfer to sulfate-reducing partners.
- This adaptation is key to the energy conservation driving ethanotrophy.
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