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Updated: Jun 9, 2025

A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Combined HDAC8 and checkpoint kinase inhibition induces tumor-selective synthetic lethality in preclinical models
Ting-Yu Chang1, Yan Yan2, Zih-Yao Yu1
1PhD Program in Drug Discovery and Development Industry, College of Pharmacy, Taipei Medical University, Taipei, Taiwan.
Abstract:
The elevated level of replication stress is an intrinsic characteristic of cancer cells. Targeting the mechanisms that maintain genome stability to further increase replication stress and thus induce severe genome instability has become a promising approach for cancer treatment. Here, we identify histone deacetylase 8 (HDAC8) as a drug target whose inactivation synergized with the inhibition of checkpoint kinases to elicit substantial replication stress and compromise genome integrity selectively in cancer cells. We showed that simultaneous inhibition of HDAC8 and checkpoint kinases led to extensive replication fork collapse, irreversible cell-cycle arrest, and synergistic vulnerability in various cancer cells. The efficacy of the combination treatment was further validated in patient tumor-derived organoid (PDO) and xenograft mouse (PDX) models, providing important insights into patient-specific drug responses. Our data revealed that HDAC8 activity was essential for reducing the acetylation level of structural maintenance of chromosomes protein 3 (SMC3) ahead of replication forks and preventing R loop formation. HDAC8 inactivation resulted in slowed fork progression and checkpoint kinase activation. Our findings indicate that HDAC8 guards the integrity of the replicating genome, and the cancer-specific synthetic lethality between HDAC8 and checkpoint kinases provides a promising replication stress-targeting strategy for treating a broad range of cancers.
Insights
Inactivating histone deacetylase 8 (HDAC8) combined with checkpoint kinase inhibitors causes significant replication stress, selectively harming cancer cells. This dual targeting offers a novel cancer treatment strategy by exploiting cancer-specific vulnerabilities.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Cancer cells exhibit elevated replication stress, making them vulnerable to further genomic instability.
- Targeting genome stability mechanisms is a promising cancer treatment strategy.
- Histone deacetylase 8 (HDAC8) is explored as a potential drug target.
Purpose of the Study:
- To identify HDAC8 as a drug target that synergizes with checkpoint kinase inhibition.
- To investigate the combined effect of HDAC8 and checkpoint kinase inhibition on cancer cell genome integrity.
- To validate the efficacy of this combination therapy in preclinical models.
Main Methods:
- Inhibition of HDAC8 and checkpoint kinases in various cancer cell lines.
- Assessment of replication fork collapse, cell-cycle arrest, and genome instability.
- Validation in patient tumor-derived organoid (PDO) and patient-derived xenograft (PDX) mouse models.
- Analysis of HDAC8's role in regulating SMC3 acetylation and R loop formation.
Main Results:
- Simultaneous inhibition of HDAC8 and checkpoint kinases induced substantial replication stress and compromised genome integrity selectively in cancer cells.
- This combination led to extensive replication fork collapse, irreversible cell-cycle arrest, and synergistic vulnerability.
- HDAC8 inactivation was shown to slow fork progression and activate checkpoint kinases by affecting SMC3 acetylation and R loop formation.
- Therapeutic efficacy was confirmed in PDO and PDX models, highlighting patient-specific responses.
Conclusions:
- HDAC8 plays a crucial role in maintaining replicating genome integrity.
- The synthetic lethality between HDAC8 and checkpoint kinases offers a cancer-specific targeting strategy.
- This approach holds promise for treating a broad spectrum of cancers by inducing replication stress.
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