Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Crystal Field Theory - Tetrahedral and Square Planar Complexes02:46

Crystal Field Theory - Tetrahedral and Square Planar Complexes

41.6K
Tetrahedral Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
41.6K
Crystal Field Theory - Octahedral Complexes02:58

Crystal Field Theory - Octahedral Complexes

26.2K
Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
26.2K
Protein Networks02:26

Protein Networks

3.9K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
3.9K
Protein-protein Interfaces02:04

Protein-protein Interfaces

12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K
Fischer Projections02:18

Fischer Projections

13.1K
Learning to draw Fischer projections of molecules and understanding their relevance plays a crucial role in the visual depiction of organic molecules. A Fischer projection is a two-dimensional projection on a planar surface to simplify the three-dimensional wedge–dash representation of molecules. This is especially helpful in the case of molecules with multiple chiral centers that can be difficult to draw. Here, all the bonds of interest are represented as horizontal or vertical lines.
13.1K
Woodward–Hoffmann Selection Rules and Microscopic Reversibility01:34

Woodward–Hoffmann Selection Rules and Microscopic Reversibility

3.0K
Electrocyclic reactions, cycloadditions, and sigmatropic rearrangements are concerted pericyclic reactions that proceed via a cyclic transition state. These reactions are stereospecific and regioselective. The stereochemistry of the products depends on the symmetry characteristics of the interacting orbitals and the reaction conditions. Accordingly, pericyclic reactions are classified as either symmetry-allowed or symmetry-forbidden. Woodward and Hoffmann presented the selection criteria for...
3.0K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Impact of land use on antibiotic resistance genes and bacterial communities in rivers.

Environmental research·2025
Same author

Autotrophic denitrification in coking wastewater treatment systems: Comprehensive comparative study of full-scale systems in China.

Bioresource technology·2025
Same author

Adipose progenitor cell-derived extracellular vesicles suppress macrophage M1 program to alleviate midlife obesity.

Nature communications·2025
Same author

Glymphatic system dysfunction in adult ADHD: Relationship to cognitive performance.

Journal of affective disorders·2025
Same author

Causal Relationship Between Intelligence, Noncognitive Education, Cognition and Urinary Tract or Kidney Infection: A Mendelian Randomization Study.

International journal of nephrology and renovascular disease·2025
Same author

Visualizing spatiotemporal pattern of vascularization by SWIR fluorescence imaging in a mouse model of perforator flap transplantation.

Journal of nanobiotechnology·2025

Related Experiment Video

Updated: Jun 9, 2025

3D Modeling of Dendritic Spines with Synaptic Plasticity
07:13

3D Modeling of Dendritic Spines with Synaptic Plasticity

Published on: May 18, 2020

6.8K

Tripartite interaction representation algorithm for crystal graph neural networks.

Yang Yuan1,2, Ziyi Chen1,2, Tianyu Feng3

  • 1Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China.

Scientific Reports
|October 22, 2024
PubMed
Summary
This summary is machine-generated.

This study introduces an advanced artificial intelligence model for materials science, improving crystal structure descriptions and formation energy predictions. The AI model achieves high accuracy, enhancing computational efficiency in materials design.

More Related Videos

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
07:11

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules

Published on: March 22, 2019

6.8K
A Computer-assisted Multi-electrode Patch-clamp System
11:01

A Computer-assisted Multi-electrode Patch-clamp System

Published on: October 18, 2013

13.8K

Related Experiment Videos

Last Updated: Jun 9, 2025

3D Modeling of Dendritic Spines with Synaptic Plasticity
07:13

3D Modeling of Dendritic Spines with Synaptic Plasticity

Published on: May 18, 2020

6.8K
Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
07:11

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules

Published on: March 22, 2019

6.8K
A Computer-assisted Multi-electrode Patch-clamp System
11:01

A Computer-assisted Multi-electrode Patch-clamp System

Published on: October 18, 2013

13.8K

Area of Science:

  • Materials Science
  • Artificial Intelligence
  • Computational Chemistry

Background:

  • Emerging research in artificial intelligence (AI) offers innovative tools for materials design and performance optimization.
  • Accurate characterization of material structures is a key research focus in materials science.
  • Existing methods for describing crystal structures and predicting material properties have limitations.

Purpose of the Study:

  • To propose a novel crystal graph convolution neural network (CGCNN) model for precise crystal structure description.
  • To enhance the prediction accuracy of formation energy for crystalline compounds.
  • To establish a CGCNN framework for predicting algorithm performance and improving computational efficiency.

Main Methods:

  • Development of a CGCNN model with a tripartite interaction approach, incorporating atomic information, bond lengths, and bond angles.
  • Implementation of a method for updating atomic and bond information to capture implicit structural details.
  • Integration of automatic parallel algorithms and an automated process for enhanced computational efficiency.

Main Results:

  • The proposed model demonstrates improved predictive accuracy for formation energy compared to existing algorithms.
  • Achieved an average error of 0.048 eV/atom for formation energy prediction on a random dataset.
  • Attained a high R-squared value of 0.994, indicating robust generalization capabilities.
  • Established a CGCNN framework for predicting algorithm performance.

Conclusions:

  • The developed CGCNN model provides accurate descriptions of crystal structures and enhances formation energy prediction.
  • The model's ability to capture implicit structural information leads to superior predictive performance.
  • The integration of AI with parallel algorithms streamlines computational processes and enhances efficiency in materials science research.