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Uncertainty Qualification for Deep Learning-Based Elementary Reaction Property Prediction.

Yan Liu1,2, Yiming Mo1,3, Youwei Cheng1,2,4

  • 1College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.

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Deep learning models accurately predict chemical reaction properties but often lack uncertainty quantification. This study integrates graph convolutional neural networks with uncertainty techniques, finding deep ensembles best for reliable predictions and uncertainty estimation.

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Area of Science:

  • Computational Chemistry
  • Chemical Kinetics
  • Machine Learning

Background:

  • Deep learning (DL) significantly advances the prediction of thermodynamic and kinetic properties for elementary reactions.
  • However, the quantification of prediction uncertainty in these DL models remains underexplored, limiting confidence in their practical application.

Purpose of the Study:

  • To integrate graph convolutional neural networks (GCNN) with uncertainty quantification techniques.
  • To evaluate the performance of different uncertainty prediction methods (deep ensemble, Monte Carlo dropout, evidential learning) for chemical reaction properties.
  • To demonstrate the utility of uncertainty quantification in refining kinetic models.

Main Methods:

  • Implemented GCNN combined with deep ensemble, Monte Carlo (MC)-dropout, and evidential learning for uncertainty prediction.
  • Utilized Monte Carlo Tree Search (MCTS) for extracting explainable reaction substructures.
  • Performed uncertainty-guided calibration of a DL-constructed kinetic model.

Main Results:

  • The deep ensemble model demonstrated superior accuracy and reliable uncertainty estimation across various datasets.
  • The deep ensemble model effectively distinguished between epistemic and aleatoric uncertainties.
  • Uncertainty-guided calibration of the kinetic model improved pathway identification by 25% compared to standard calibration.

Conclusions:

  • Deep ensemble methods offer a robust approach for uncertainty quantification in DL-based prediction of chemical reaction properties.
  • Explainable AI techniques, like MCTS, can provide chemical insights into DL predictions and their uncertainties.
  • Uncertainty quantification is crucial for enhancing the reliability and practical utility of DL-generated kinetic models.