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Updated: Jun 9, 2025

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Published on: September 20, 2024
Biomarker identification and risk assessment of cardiovascular disease based on untargeted metabolomics and machine
Xu Zhou1, Xinhao Sun1, Hongwei Zhao1
1School of Public Health/Key Laboratory of Endemic and Ethnic Diseases, Ministry of Education & Key Laboratory of Medical Molecular Biology of Guizhou Province, Guizhou Medical University, No. 6 Ankang Avenue, Gui'an New District, Guiyang, Guizhou Province, 561113, China.
Insights
This study identified key metabolites and clinical factors to predict cardiovascular disease (CVD) risk. A machine learning model using these biomarkers achieved 91% accuracy, offering a promising tool for early CVD detection.
Area of Science:
- Biochemistry
- Metabolomics
- Machine Learning
Background:
- Cardiovascular disease (CVD) remains a primary cause of death and disability globally.
- Despite advancements, effective diagnosis and prevention of CVD remain significant challenges.
- Identifying novel biomarkers is crucial for improving CVD risk assessment.
Purpose of the Study:
- To discover novel CVD-associated biomarkers.
- To develop a machine learning model for accurate CVD risk assessment.
Main Methods:
- Untargeted metabolomic analysis using ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS).
- Analysis of routine clinical biochemistry tests.
- Development and validation of a machine learning model.
Main Results:
- Identified 164 CVD-associated metabolites, particularly in glycerophospholipid metabolism and unsaturated fatty acid biosynthesis.
- A machine learning model integrating metabolites (e.g., palmitic amide, oleic acid, phosphatidylcholine, linoleic acid) and clinical factors (age, direct bilirubin, inorganic phosphate) achieved a high accuracy of 0.91 for CVD risk assessment.
- Disruptions in biological membrane and energy metabolism are linked to vascular damage in CVD.
Conclusions:
- Metabolic disorders, especially in membrane and energy pathways, are significantly associated with CVD risk.
- The developed machine learning model shows promise for efficient CVD risk assessment and diagnosis.
- Integrated biomarker panels offer a novel approach to enhance early detection and management of cardiovascular disease.
Abstract:
Cardiovascular disease (CVD) is the leading cause of mortality, disability, and healthcare costs, with a significant impact on the elderly and contributing to premature deaths across various age groups, including those below age 70. Despite decades of transformative discoveries and clinical efforts, the challenges of diagnosis, prevention, and treatment of CVD persist on a massive scale. This study aimed to unravel potential CVD-associated biomarkers and establish a machine learning model for the risk assessment of CVD. Untargeted metabolic assay with ultra-high performance liquid chromatography-tandem mass spectrometry and routine clinical biochemistry test were undertaken on the fasting venous blood specimens from 57 subjects. Four relevant clinical traits and 164 CVD-associated metabolites were identified, especially those related to glycerophospholipid metabolism and biosynthesis of unsaturated fatty acids. The machine learning model achieved from an integrated biomarker panel of palmitic amide, oleic acid, 138-pos (the 138th detected metabolomic feature in positive ion mode), phosphatidylcholine, linoleic acid, age, direct bilirubin, and inorganic phosphate, was able to improve the accuracy of CVD risk assessment up to a high satisfactory value of 0.91. The findings indicate that disorders in the metabolic processes of biological membranes and energy are significantly associated with increased risk of vascular damage in CVD patients. With machine learning methods, the pivotal metabolites and clinical biomarkers offer a promising potential for the efficient risk assessment and diagnosis of CVD.
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