PRISM: Patient Records Interpretation for Semantic clinical trial Matching system using large language models
Shashi Gupta1, Aditya Basu1, Mauro Nievas1
1Triomics Research, San Francisco, CA, USA.
NPJ Digital Medicine
|October 29, 2024
Summary
This study introduces OncoLLM, a custom Large Language Model (LLM) for clinical trial matching. OncoLLM effectively uses real-world electronic health records (EHRs) to identify eligible patients, outperforming existing models.
Area of Science:
- Medical Informatics
- Artificial Intelligence in Medicine
- Clinical Research
Background:
- Clinical trial matching is crucial but labor-intensive, often relying on manual review of electronic health records (EHRs).
- Current automated methods using Large Language Models (LLMs) are limited by synthetic datasets, failing to capture real-world data complexities.
- Patients often miss potential therapeutic options due to inefficiencies in the matching process.
Purpose of the Study:
- To conduct a large-scale empirical evaluation of an automated clinical trial matching system using real-world EHR data.
- To compare the performance of a custom-tuned LLM, OncoLLM, against proprietary LLMs and human experts.
- To demonstrate the feasibility and effectiveness of LLMs in real-world clinical trial eligibility screening.
Main Methods:
- Developed and fine-tuned a custom LLM, OncoLLM, specifically for clinical trial matching.
- Conducted comprehensive experiments using a large dataset of real-world electronic health records (EHRs).
- Evaluated OncoLLM's performance against GPT-3.5 and a panel of qualified medical doctors.
Main Results:
- OncoLLM demonstrated superior performance compared to GPT-3.5 in clinical trial matching.
- The custom LLM achieved performance comparable to that of qualified medical doctors.
- The study validates the use of LLMs with real-world EHRs for efficient patient-trial matching.
Conclusions:
- Automated clinical trial matching using LLMs, particularly custom-tuned models like OncoLLM, is effective with real-world data.
- OncoLLM offers a promising solution to improve patient access to clinical trials by overcoming limitations of current methods.
- This approach can significantly reduce the manual effort and time required for clinical trial eligibility assessment.
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