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Updated: Jun 9, 2025

Nucleoside Triphosphates - From Synthesis to Biochemical Characterization
Published on: April 3, 2014
Photophysics of Nitro-Substituted Unnatural Nucleic Acid Base
Adithya Krishnan Pradeep Kumar1, Supriyo Santra1, Debashree Ghosh1
1School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India.
Abstract:
The unnatural nucleic acid base (uNAB), 6-amino-3-methyl-5-nitropyridin-2(1H)one, often referred to as Z can form a base pair with the uNAB 2-aminoimidazo[1,2-a]-1,3,5-triazin-4(8H)-one (referred to as P) and is analogous to a guanine-cytosine (G-C) pair. However, it is well-known that the nonradiative decay pathway of the P-Z pair is significantly different from that of the G-C pair (Cui et al., Front. Chem. 2020, 8, 605117-605125). In this work, we study the excited state processes in Z using state-of-the-art multireference methods and dynamical techniques to ascertain the predominant nonradiative channels. We find that unlike in the natural NABs, the excited state processes in Z are driven primarily by the -NO2 group rotation. The electron-withdrawing effect of the -NO2 substituent plays a crucial role. We further ascertained that ultrafast deactivation channels are possible in Z and identified the stationary point geometries that are responsible for these channels.
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