Predicting pathologic complete response to neoadjuvant chemotherapy in breast cancer using a machine learning
Fangyuan Zhao1, Eric Polley2, Julian McClellan2
1Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Laboratory of Molecular Oncology, Peking University Cancer Hospital & Institute, Beijing, China.
A new machine learning model accurately predicts breast cancer patients' response to neoadjuvant chemotherapy (NACT) using only clinicopathological features. This tool helps identify patients unlikely to achieve pathologic complete response (pCR), potentially guiding treatment decisions.
Area of Science:
- Oncology
- Machine Learning in Medicine
- Clinical Decision Support
Background:
- Existing prediction models for neoadjuvant chemotherapy (NACT) response in breast cancer often rely on standard statistical methods or complex data like imaging and gene expression.
- There is a need for accessible machine learning models utilizing solely clinicopathological features for predicting pathologic complete response (pCR).
- Such models can aid clinical decision-making across various healthcare settings.
Purpose of the Study:
- To develop and validate a robust machine learning model for predicting pCR in breast cancer patients undergoing NACT.
- To evaluate the model's performance using only quantitative clinicopathological features.
- To assess the clinical utility and potential impact on chemotherapy use.
Main Methods:
- Development and validation of logistic regression and machine learning models using the National Cancer Data Base (NCDB) and an external cohort.
- Comparison of model performance with and without the incorporation of quantitative clinicopathological features.
- Decision curve analysis to determine the clinical utility of the best-performing model.
Main Results:
- The machine learning model incorporating quantitative clinicopathological features achieved the highest discrimination (AUC: 0.785) and calibration.
- The model demonstrated superior performance in hormone receptor-positive/human epidermal growth factor receptor 2-negative (HR+/HER2-) breast cancer (AUC: 0.817).
- In an external cohort, the model maintained robust performance (AUC: 0.711 overall, 0.810 in HR+/HER2- subgroup), suggesting potential for reduced chemotherapy use.
Conclusions:
- A validated machine learning model can accurately predict pCR in breast cancer patients receiving NACT using clinicopathological data.
- The model shows particular promise for identifying HR+/HER2- patients less likely to respond to chemotherapy, enabling alternative treatment considerations.
- This model serves as a valuable baseline for future research integrating additional granular features.
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