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Identifying Coronary Artery Calcification on Non-gated Computed Tomography Scans
Published on: August 28, 2018
Genetic risk score for coronary artery calcification and its predictive ability for coronary artery disease
Pashupati P Mishra1,2,3, Binisha H Mishra1,2,3, Leo-Pekka Lyytikäinen1,2,3
1Department of Clinical Chemistry, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Insights
A new genetic risk score (GRS) for coronary artery calcification (CAC) shows significant predictive ability for coronary artery disease (CAD). This CAC GRS offers added value over traditional risk factors and improves CAD prediction when combined with existing scores.
Area of Science:
- Cardiovascular Genetics
- Genomic Prediction Models
- Biomarker Discovery
Background:
- Existing genetic risk scores (GRSs) for coronary artery disease (CAD) have modest predictive value.
- Genetic components influencing CAD may be found in intermediate phenotypes like coronary artery calcification (CAC).
Purpose of the Study:
- To investigate the predictive ability of a CAC-specific GRS for CAD.
- To assess the added predictive value of CAC GRS over traditional cardiovascular disease (CVD) risk factors and a comprehensive CAD GRS (metaGRS).
Main Methods:
- Utilized summary data from a large multi-ancestry genome-wide association study (GWAS) meta-analysis of CAC.
- Investigated associations in three European cohorts: Ludwigshafen Risk and Cardiovascular Health (LURIC), Tampere Vascular Study (TVS), and Tampere Sudden Death Study (TSDS).
- Employed a machine learning approach to test the added predictive value of CAC GRS over traditional CVD risk factors and metaGRS using LURIC data.
Main Results:
- CAC GRS was significantly associated with CAD across all three cohorts (LURIC, TVS, TSDS).
- CAC GRS demonstrated a strong association with calcification in both left and right coronary arteries.
- CAC GRS provided statistically significant added predictive value for CAD over traditional CVD risk factors (AUC 0.734 vs 0.717, p=0.02) and improved prediction when combined with metaGRS.
Conclusions:
- The CAC GRS serves as a novel risk marker for CAD.
- This GRS offers incremental predictive value beyond established CVD risk factors.
- Incorporating CAC GRS may enhance the accuracy of CAD risk prediction models.
Aim:
The modest added predictive value of the existing genetic risk scores (GRSs) for coronary artery disease (CAD) could be partly due to missing genetic components, hidden in the genetic architecture of intermediate phenotypes such as coronary artery calcification (CAC). In this study, we investigated the predictive ability of CAC GRS for CAD.
Materials And Methods:
We investigated the association of CAC GRSs with CAD and coronary calcification among the participants in the Ludwigshafen Risk and Cardiovascular Health study (LURIC) (n = 2742), the Tampere Vascular Study (TVS) (n = 133), and the Tampere Sudden Death Study (TSDS) (n = 660) using summary data from the largest multi-ancestry GWAS meta-analysis of CAC to date. Added predictive value of the CAC GRS over the traditional CVD risk factors as well as metaGRS, a GRS for CAD constructed with 1.7 million genetic variants, was tested with standard train-test machine learning approach using the LURIC data, which had the largest sample size.
Results:
CAC GRS was significantly associated with CAD in LURIC (OR=1.41, 95 % CI [1.28-1.55]), TVS (OR=1.79, 95 % CI [1.05-3.21]) as well as in TSDS (OR=4.20, 95 % CI [1.74-10.52]). CAC GRS showed strong association with calcification areas in left (OR=1.78, 95 % CI [1.16-2.74]) and right (OR=1.71, 95 % CI [1.98-2.67]) coronary arteries. There was statistically significant added predictive value of the CAC GRS for CAD over the used traditional CVD risk factors (AUC 0.734 vs 0.717, p-value = 0.02). Furthermore, CAC GRS improved the prediction accuracy for CAD when combined with metaGRS.
Conclusions:
This study showed that CAC GRS is a new risk marker for CAD in three European cohorts, with added predictive value over the traditional CVD risk factors.
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