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A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
N6-Methyladenosine modification activates the serine synthesis pathway to mediate therapeutic resistance in liver
For-Fan Chan1, Kenneth Kin-Leung Kwan2, Do-Hyun Seoung2
1State Key Laboratory of Liver Research and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong.
Abstract:
Metabolic adaptation serves as a significant driving force for cancer growth and poses a substantial obstacle for cancer therapies. Herein, we unraveled the role of m6A-mediated serine synthesis pathway (SSP) regulation in both hepatocellular carcinoma (HCC) development and therapeutic resistance. We demonstrated that treatment of highly specific m6A inhibitor (STM2457) effectively inhibited HCC cell line growth and suppressed spontaneous HCC formation in mice driven by liver-specific Tp53 knockout and Myc overexpression. Using GLORI-seq, we delineated a single-base-resolution m6A landscape in human HCC cell lines. Interestingly, we identified three core enzymes in the SSP (PHGDH, PSAT1, and PSPH) as novel targets of METTL3-mediated m6A modification. In these SSP genes, m6A modification recruited m6A reader IGF2BP3 to stabilize their mRNA transcripts, thereby enhancing their mRNA and protein expression in HCC cells. Most importantly, our GLORI-seq data revealed that sorafenib-resistant HCC cells elevated m6A modification in SSP genes to promote protein expression and antioxidant production. STM2457 treatment attenuated the serine synthesis pathway, induced oxidative stress, and sensitized HCC cells to sorafenib and lenvatinib treatments. In conclusion, our findings suggest that targeting m6A could be a potential therapeutic strategy for HCC treatment.
Insights
Targeting m6A modification of the serine synthesis pathway (SSP) inhibits hepatocellular carcinoma (HCC) growth and overcomes drug resistance. This study reveals m6A regulation of SSP enzymes, offering a potential therapeutic strategy for HCC.
Area of Science:
- Cancer Biology
- Epigenetics
- Metabolic Pathways
Background:
- Metabolic adaptation is crucial for cancer progression and treatment resistance.
- The role of N6-methyladenosine (m6A) modification in hepatocellular carcinoma (HCC) remains incompletely understood.
- Serine synthesis pathway (SSP) dysregulation contributes to cancer development.
Purpose of the Study:
- To investigate the role of m6A-mediated regulation of the SSP in HCC.
- To explore the potential of targeting m6A modification for HCC therapy and overcoming resistance.
Main Methods:
- Treatment of HCC cell lines and mice with the m6A inhibitor STM2457.
- GLORI-seq to map the m6A landscape in HCC.
- Analysis of m6A modification, mRNA/protein expression of SSP enzymes (PHGDH, PSAT1, PSPH), and oxidative stress markers.
Main Results:
- STM2457 inhibited HCC cell growth and spontaneous tumor formation in mice.
- METTL3-mediated m6A modification of SSP enzymes (PHGDH, PSAT1, PSPH) was identified, stabilized by IGF2BP3.
- Sorafenib-resistant HCC cells showed increased m6A modification in SSP genes, enhancing protein and antioxidant production; STM2457 reversed this, sensitizing cells to therapy.
Conclusions:
- m6A modification of the serine synthesis pathway is a key driver of HCC development and therapeutic resistance.
- Targeting m6A modification, particularly with inhibitors like STM2457, represents a promising therapeutic strategy for HCC.
- This approach can overcome resistance to existing therapies by attenuating the SSP and inducing oxidative stress.
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