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  1. Home
  2. Optimizing Multi-environment Trials In The Southern Us Rice Belt Via Smart-climate-soil Prediction-based Models And Economic Importance.
  1. Home
  2. Optimizing Multi-environment Trials In The Southern Us Rice Belt Via Smart-climate-soil Prediction-based Models And Economic Importance.

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Optimizing multi-environment trials in the Southern US Rice belt via smart-climate-soil prediction-based models and

Melina Prado1, Adam Famoso2, Kurt Guidry2

  • 1Department of Genetics, "Luiz de Queiroz" College of Agriculture/University of São Paulo, Piracicaba, Brazil.

Frontiers in Plant Science
|November 7, 2024

View abstract on PubMed

Summary
This summary is machine-generated.

Optimizing multi-environmental trials (MET) for rice breeding can reduce locations by 28% without losing accuracy. This improves breeding efficiency by using environmental covariates and clustering trial sites effectively.

Keywords:
envirotypinggenotype x environmentmarket segmentssupervised learningtarget population of environments

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Area of Science:

  • Agricultural Science
  • Plant Breeding
  • Genetics

Background:

  • Global rice breeding aims for productive, climate-smart cultivars, but genetic gains are hindered by phenotyping costs and trial allocation challenges.
  • Optimizing the number and placement of multi-environmental trials (MET) is crucial for efficient rice breeding programs.

Purpose of the Study:

  • To develop a cost-effective and accurate method for optimizing MET design in rice breeding.
  • To identify key environmental covariates (ECs) influencing rice grain yield and genotype-by-environment interactions.

Main Methods:

  • Utilized historical weather and soil data from the USA rice belt, translating it into rice response metrics.
  • Applied feature selection algorithms to identify significant ECs and clustered trial locations based on environmental similarity.
  • Conducted joint analysis using prediction-based models under various trial scenarios to assess optimization strategies.
  • Main Results:

    • Eight ECs explained 58% of grain yield variation and 53% of genotype-by-environment interaction.
    • A 28% reduction in trial locations is feasible without significant loss of accuracy.
    • The US Rice belt was segmented into four distinct environmental clusters with varying economic importance.

    Conclusions:

    • The developed approach optimizes MET allocation, reducing costs and improving efficiency in rice breeding.
    • Environmental covariates and spatial clustering are effective tools for designing more informative and cost-efficient trials.
    • This strategy aids in better advance trial allocation, enhancing the accuracy of breeding programs.