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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy
Published on: October 4, 2019
IGF2BP2 orchestrates global expression and alternative splicing profiles associated with glioblastoma development in
Wenqing Liu1, Yan Liu2, Haoyuan Li2
1Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.
Abstract:
Glioblastoma (GBM) is a highly invasive and malignant central nervous system tumor with a median survival duration of 15 months despite multimodal therapy. The insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) has been implicated in various cancers and is known to regulate RNA metabolism and alternative splicing (AS). However, its role in GBM remains unclear. Overexpression of IGF2BP2 led to significant alterations in gene expression, with 472 genes upregulated and 99 downregulated. Gene ontology (GO) analysis indicated enrichment in immune-related biological processes. Notably, IGF2BP2 was found to regulate AS events, with 1372 regulated AS genes (RASGs) and 2096 significantly distinct ASEs identified. Furthermore, IGF2BP2 selectively bound to 3' and 5' untranslated regions (UTRs) via GG[AU]C motifs, and IFIH1 was identified as a direct binding partner and upregulated gene upon IGF2BP2 overexpression. Functional enrichment analysis suggested that IGF2BP2 influences pathways related to RNA splicing and immune responses. Our findings demonstrate that IGF2BP2 plays a crucial role in GBM by modulating the transcriptome and AS events. The upregulation of immune-related genes and the regulation of AS by IGF2BP2 highlight its potential as a therapeutic target in GBM, particularly for immunotherapy. The study provides a foundation for further investigation into the molecular mechanisms of IGF2BP2 in GBM and its implications for cancer treatment.
Insights
Insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) significantly alters gene expression and RNA splicing in glioblastoma (GBM). This protein
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Glioblastoma (GBM) is an aggressive brain tumor with poor prognosis.
- Insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) is implicated in cancer but its role in GBM is unknown.
- IGF2BP2 regulates RNA metabolism and alternative splicing (AS).
Purpose of the Study:
- To investigate the role of IGF2BP2 in glioblastoma.
- To identify genes and alternative splicing events regulated by IGF2BP2 in GBM.
- To explore IGF2BP2 as a potential therapeutic target in GBM.
Main Methods:
- Overexpression of IGF2BP2 in GBM cells.
- RNA sequencing to analyze gene expression and alternative splicing events.
- Gene Ontology (GO) analysis and pathway enrichment analysis.
- Identification of direct binding partners of IGF2BP2.
Main Results:
- IGF2BP2 overexpression significantly altered gene expression (472 upregulated, 99 downregulated).
- IGF2BP2 regulated 1372 alternative splicing genes (RASGs) and 2096 alternative splicing events (ASEs).
- GO analysis revealed enrichment in immune-related processes and RNA splicing pathways.
- IFIH1 was identified as a direct binding partner and upregulated gene.
Conclusions:
- IGF2BP2 plays a critical role in GBM by modulating the transcriptome and alternative splicing.
- IGF2BP2 influences immune response and RNA splicing pathways in GBM.
- IGF2BP2 is a potential therapeutic target for glioblastoma, especially for immunotherapy.
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