IGF2BP2 orchestrates global expression and alternative splicing profiles associated with glioblastoma development in

Wenqing Liu1, Yan Liu2, Haoyuan Li2

  • 1Department of Neurosurgery, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China.

Translational Oncology
|November 8, 2024
PubMed

Insights

Insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) significantly alters gene expression and RNA splicing in glioblastoma (GBM). This protein

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • Glioblastoma (GBM) is an aggressive brain tumor with poor prognosis.
  • Insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) is implicated in cancer but its role in GBM is unknown.
  • IGF2BP2 regulates RNA metabolism and alternative splicing (AS).

Purpose of the Study:

  • To investigate the role of IGF2BP2 in glioblastoma.
  • To identify genes and alternative splicing events regulated by IGF2BP2 in GBM.
  • To explore IGF2BP2 as a potential therapeutic target in GBM.

Main Methods:

  • Overexpression of IGF2BP2 in GBM cells.
  • RNA sequencing to analyze gene expression and alternative splicing events.
  • Gene Ontology (GO) analysis and pathway enrichment analysis.
  • Identification of direct binding partners of IGF2BP2.

Main Results:

  • IGF2BP2 overexpression significantly altered gene expression (472 upregulated, 99 downregulated).
  • IGF2BP2 regulated 1372 alternative splicing genes (RASGs) and 2096 alternative splicing events (ASEs).
  • GO analysis revealed enrichment in immune-related processes and RNA splicing pathways.
  • IFIH1 was identified as a direct binding partner and upregulated gene.

Conclusions:

  • IGF2BP2 plays a critical role in GBM by modulating the transcriptome and alternative splicing.
  • IGF2BP2 influences immune response and RNA splicing pathways in GBM.
  • IGF2BP2 is a potential therapeutic target for glioblastoma, especially for immunotherapy.

Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.0K
What is Gene Expression?01:36

What is Gene Expression?

A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
8.4K
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the...
4.5K