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Development of an Electrochemical DNA Biosensor to Detect a Foodborne Pathogen
Published on: June 3, 2018
[Etiological characteristics and whole genome sequence analysis of Clostridium perfringens causing a food poisoning
1Qingdao Center for Disease Control and Prevention of Bacterial Disease Laboratory/Qingdao Institute of Prevention Medicine, ShandongQingdao266033, China.
Abstract:
This study investigated the etiological characteristics and whole genome sequencing of clostridium perfringens (CP) from a food poisoning outbreak. Multiplex real-time PCR was employed to screen pathogens in collected samples. Based on the preliminary screening results, the isolation, cultivation, and identification of suspected pathogenic CP bacteria were performed. The nucleic acid tests were conducted for CP-related virulence genes on CP isolates, anal swab specimens and food samples. The molecular typing of CP isolates was analyzed by using pulsed-field gel electrophoresis (PFGE). A phylogenetic tree was established to analyze nucleotide and amino acid homology after sequencing the PLC gene. The whole genome sequencing and gene annotation on the representative strain QD2022FB4-CP4 were performed to explore its drug resistance, toxin genes and biological characteristics. The analysis revealed that the food poisoning was triggered by F-type Clostridium perfringens, which infected the consumers by contaminating'roujiamo' sandwiches. The whole genome sequencing of the strain QD2022FB4-CP found that it had active metabolic processes, multiple virulence genes and multidrug resistance characteristics.
Insights
This study identified F-type Clostridium perfringens as the cause of a food poisoning outbreak linked to roujiamo sandwiches. Whole genome sequencing revealed the pathogen
Area of Science:
- Foodborne illness microbiology
- Genomic epidemiology
- Bacterial pathogenesis
Context:
- Investigating a food poisoning outbreak linked to 'roujiamo' sandwiches.
- Identifying the etiological agent responsible for human illness.
Purpose:
- To determine the characteristics of Clostridium perfringens (CP) involved in a food poisoning outbreak.
- To perform whole genome sequencing of the causative CP strain.
- To analyze virulence factors, drug resistance, and biological traits of the pathogen.
Summary:
- Multiplex real-time PCR and nucleic acid tests identified CP.
- Molecular typing using pulsed-field gel electrophoresis (PFGE) and PLC gene sequencing provided phylogenetic insights.
- Whole genome sequencing of strain QD2022FB4-CP4 revealed active metabolism, multiple virulence genes, and multidrug resistance.
Impact:
- Identified F-type Clostridium perfringens as the cause of the outbreak.
- Characterized the pathogen's genomic features, including virulence and resistance.
- Provides valuable data for understanding and preventing future foodborne CP outbreaks.
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