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Updated: Jun 7, 2025

Reprograming Model of Human Monocyte-derived Macrophages for In-vitro Assays
Published on: April 18, 2025
Alternative mRNA polyadenylation regulates macrophage hyperactivation via the autophagy pathway
Yunzhu Chen1,2, Baiwen Chen1,2, Jingyu Li1,2
1Shanghai Institute of Immunology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Abstract:
Macrophage hyperactivation is a hallmark of inflammatory diseases, yet the role of alternative polyadenylation (APA) of mRNAs in regulating innate immunity remains unclear. In this study, we focused on 3'UTR-APA and demonstrated that Nudt21, a crucial RNA-binding component of the 3'UTR-APA machinery, is significantly upregulated in various inflammatory conditions. By utilizing myeloid-specific Nudt21-deficient mice, we revealed a protective effect of Nudt21 depletion against colitis and severe hyperinflammation, primarily through diminished production of proinflammatory cytokines. Notably, Nudt21 regulates the mRNA stability of key autophagy-related genes, Map1lc3b and Ulk2, by mediating selective 3'UTR polyadenylation in activated macrophages. As a result, Nudt21-deficient macrophages display increased autophagic activity, which leads to reduced cytokine secretion. Our findings highlight an unexplored role of Nudt21-mediated 3'UTR-APA in modulating macrophage autophagy and offer new insights into the modulation of inflammation and disease progression.
Insights
Nudt21, a key factor in alternative polyadenylation, drives inflammation by suppressing autophagy in macrophages. Depleting Nudt21 protects against inflammatory diseases by boosting autophagy and reducing inflammatory cytokines.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Macrophage hyperactivation is central to inflammatory diseases.
- The role of alternative polyadenylation (APA) in innate immunity is not well understood.
- 3' untranslated region (3'UTR) APA is a critical post-transcriptional regulatory mechanism.
Purpose of the Study:
- To investigate the role of Nudt21 in regulating innate immunity via 3'UTR-APA.
- To determine the impact of Nudt21 on macrophage function and inflammatory responses.
- To explore the connection between Nudt21, autophagy, and cytokine production.
Main Methods:
- Utilized myeloid-specific Nudt21-deficient mice models.
- Analyzed Nudt21 expression in various inflammatory conditions.
- Assessed cytokine production and autophagic activity in macrophages.
- Investigated the effect of Nudt21 on mRNA stability of autophagy-related genes (Map1lc3b, Ulk2).
Main Results:
- Nudt21 is upregulated in inflammatory conditions and promotes hyperinflammation.
- Nudt21 deficiency protects against colitis and severe hyperinflammation.
- Nudt21 mediates selective 3'UTR polyadenylation of autophagy genes (Map1lc3b, Ulk2) in macrophages.
- Nudt21-deficient macrophages exhibit enhanced autophagy and reduced proinflammatory cytokine secretion.
Conclusions:
- Nudt21 plays a critical role in modulating macrophage autophagy through 3'UTR-APA.
- Nudt21-mediated APA is a novel regulator of innate immunity and inflammation.
- Targeting Nudt21-APA may offer therapeutic strategies for inflammatory diseases.
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