Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Atomic Emission Spectroscopy: Lab01:29

Atomic Emission Spectroscopy: Lab

149
AES is a powerful analytical technique, especially effective when used with plasma sources, producing abundant spectra in characteristic emission lines. The Inductively Coupled Plasma (ICP), in particular, yields superior quantitative analytical data due to its high stability, low noise, low background, and minimal interferences under optimal experimental conditions. However, newer air-operated microwave sources are emerging as promising alternatives that could be more cost-effective than...
149
Atomic Emission Spectroscopy: Overview01:20

Atomic Emission Spectroscopy: Overview

1.6K
Atomic emission spectroscopy (AES) is an analytical technique used to determine the elemental composition of a sample by analyzing the light emitted from excited atoms. In AES, atoms in a sample are excited to higher energy levels by thermal energy from high-temperature sources, such as plasma, arcs, or sparks. When these excited atoms return to lower energy states, they emit light at specific wavelengths characteristic of each element. The resulting atomic emission spectrum, which consists of...
1.6K
Atomic Absorption Spectroscopy: Lab01:21

Atomic Absorption Spectroscopy: Lab

311
For AAS measurements, samples must be introduced as clear solutions, often requiring extensive preliminary treatment to dissolve materials like soils, animal tissues, and minerals. Common methods for sample preparation include treatment with hot mineral acids, wet ashing, combustion in closed containers, high-temperature ashing, or fusion with reagents.
 Solutions containing organic solvents, such as low-molecular-mass alcohols, esters, or ketones, enhance absorbances by increasing...
311
Molecular Models02:00

Molecular Models

37.9K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
37.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Mapping Active-Site Conformational Ensembles Along Competing Catalytic Pathways of the Hairpin Ribozyme.

Biophysical journal·2026
Same author

Protonation and magnesium ions shape the transition state diversity of phosphoanhydride hydrolysis in water.

Nature communications·2026
Same author

fix pimd/langevin: An efficient implementation of path integral molecular dynamics in LAMMPS.

The Journal of chemical physics·2026
Same author

Molecular Signatures of Pressure-Induced Phase Transitions in a Lipid Bilayer.

The journal of physical chemistry. B·2026
Same author

Simulating enzyme catalysis with electrostatically embedded machine learning potentials.

Chemical science·2026
Same author

Critical structural perturbations of ribozyme active sites induced by 2'-O-methylation commonly used in structural studies.

Nucleic acids research·2026

Related Experiment Video

Updated: Jun 7, 2025

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
08:21

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids

Published on: April 13, 2022

2.6K

ArcaNN: automated enhanced sampling generation of training sets for chemically reactive machine learning interatomic

Rolf David1, Miguel de la Puente1, Axel Gomez1

  • 1PASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.

Digital Discovery
|November 18, 2024
PubMed
Summary

ArcaNN generates crucial training datasets for reactive machine-learning interatomic potentials (MLIPs). This framework accurately captures high-energy chemical reaction geometries, improving molecular simulations.

More Related Videos

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

321
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.1K

Related Experiment Videos

Last Updated: Jun 7, 2025

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
08:21

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids

Published on: April 13, 2022

2.6K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

321
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.1K

Area of Science:

  • Computational Chemistry
  • Artificial Intelligence
  • Materials Science

Background:

  • Machine-learning interatomic potentials (MLIPs) offer accuracy and efficiency for molecular simulations, overcoming traditional limitations.
  • Accurate training datasets are critical for MLIPs, especially for chemical reactivity involving rare events.
  • Current methods often neglect the generation of datasets for high-energy reactive geometries.

Purpose of the Study:

  • Introduce ArcaNN, a framework for generating training datasets for reactive MLIPs.
  • Address the gap in dataset generation for chemical reactivity, particularly barrier-crossing events.
  • Enhance the accuracy and applicability of MLIPs in molecular dynamics simulations.

Main Methods:

  • Concurrent learning approach combined with advanced sampling techniques.
  • Automated iterative training, exploration, and configuration selection.
  • Energy and force labeling with emphasis on reproducibility and documentation.

Main Results:

  • ArcaNN effectively generates training datasets for reactive MLIPs.
  • Demonstrated success in modeling nucleophilic substitution and Diels-Alder reactions.
  • Achieved uniformly low errors along chemical reaction coordinates.

Conclusions:

  • ArcaNN provides a robust solution for creating high-quality datasets for reactive MLIPs.
  • The framework significantly improves the representation of high-energy geometries in molecular simulations.
  • ArcaNN has broad potential for reactive molecular dynamics and assessing MLIP quality.