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Updated: Jun 7, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Structural insights into regulated intramembrane proteolysis by the positive alginate regulator MucP from Pseudomonas
Xiaorui Lou1, Shanshan Li1, Yanan Wang1
1College of Life Sciences, State Key Laboratory of Medicinal Chemical Biology, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin 300071, China.
Abstract:
Regulated intramembrane proteolysis (RIP) is a fundamentally conserved mechanism involving sequential cleavage by a membrane-bound Site-1 protease (S1P) and a transmembrane Site-2 protease (S2P). In the opportunistic pathogen Pseudomonas aeruginosa, the alternate sigma factor σ22 activates alginate production and in turn is regulated by the MucABCD system. The anti-sigma factor MucA, which inhibits σ22, is sequentially cleaved via RIP by AlgW (S1P) and MucP (S2P) respectively. In this study, we report high-resolution crystal structures of the MucP PDZ1 and PDZ2 domains. Structural and binding analysis confirms that MucP PDZ2 recognizes the carboxy-terminal Ala136 residue of MucA following Site-1 cleavage by AlgW, while the peptide binding groove of PDZ1 is obstructed by a short α-helix. A structure of MucP PDZ2 with bound MucA peptide shows how PDZ2 binds the newly exposed carboxyl terminus of MucA following AlgW cleavage. The ability of a ΔmucP strain of P. aeruginosa to form biofilms was reduced to a similar extent as a ΔalgW strain. This work paves the way for further studies of MucP and other PDZ-containing S2Ps in regulated intramembrane proteolysis.
Insights
Regulated intramembrane proteolysis involves sequential protease cleavage. In Pseudomonas aeruginosa, MucP (Site-2 protease) cleaves MucA after AlgW (Site-1 protease), impacting biofilm formation.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Regulated intramembrane proteolysis (RIP) is a conserved mechanism for protein processing.
- The MucABCD system in Pseudomonas aeruginosa regulates the anti-sigma factor MucA, controlling alginate production.
- MucA is cleaved by Site-1 protease AlgW and Site-2 protease MucP.
Purpose of the Study:
- To elucidate the structural basis of MucP's function in regulated intramembrane proteolysis.
- To understand the interaction between MucP and its substrate MucA.
Main Methods:
- High-resolution crystal structure determination of MucP PDZ1 and PDZ2 domains.
- Structural and binding analyses of MucP-MucA interactions.
- Phenotypic analysis of Pseudomonas aeruginosa strains with mutations in mucP and algW.
Main Results:
- Crystal structures revealed MucP PDZ2 binds the C-terminal Ala136 of MucA post-AlgW cleavage.
- The PDZ1 domain's binding groove is blocked by an alpha-helix.
- MucP and AlgW are crucial for Pseudomonas aeruginosa biofilm formation.
Conclusions:
- MucP functions as a Site-2 protease, recognizing the C-terminus of MucA after Site-1 cleavage.
- The structural insights into MucP-MucA interaction provide a basis for understanding RIP.
- MucP is essential for Pseudomonas aeruginosa virulence, specifically biofilm formation.
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