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Collinearity-based Assembly Correction Tool GUI: Software for collinearity-based genome assembly correction
Shengcheng Zhang1,2, Hejun Du1, Xingtan Zhang2
1Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes, Chinese Sturgeon Research Institute, China Three Gorges Corporation, Yichang 443100, China.
None:
Genome assembly errors can have a profound effect on downstream analyses. Collinearity-based Assembly Correction Tool GUI is designed to rectify these errors by leveraging collinearity information between the assembled genome and a reference genome. Collinearity-based Assembly Correction Tool GUI provides a user-friendly interface for visualizing and manually correcting assembly errors. It supports various operations such as insertion, deletion, inversion, and swapping of contigs and chromosomes. The software automatically reclusters, relabels, and redraws the assembly after each modification, ensuring that users can easily track changes. Collinearity-based Assembly Correction Tool GUI is a robust tool designed to efficiently correct large-scale assembly errors in polyploid genomes, featuring advanced collinearity detection capabilities.
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