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Immunofluorescence Labelling of Human and Murine Neutrophil Extracellular Traps in Paraffin-Embedded Tissue
Published on: September 10, 2019
Single color digital H&E staining with In-and-Out Net
Mengkun Chen1, Yen-Tung Liu1, Fadeel Sher Khan1
1University of Texas at Austin, Department of Biomedical Engineering, 107 W Dean Keeton St, Austin, 78712, TX, United States.
This study introduces In-and-Out Net, a novel Generative Adversarial Network (GAN) for digital staining. The model efficiently converts Reflectance Confocal Microscopy (RCM) images into realistic Hematoxylin and Eosin (H&E) stained images, aiding tissue analysis.
Area of Science:
- Digital pathology
- Histological image analysis
- Medical imaging
Background:
- Traditional histological staining is time-consuming and requires extensive infrastructure.
- Digital staining offers an efficient, low-infrastructure alternative for generating stained images.
- Interpreting non-traditional microscopic images (grayscale, pseudo-color) is challenging for clinicians.
Purpose of the Study:
- To develop a novel network for digital staining, specifically transforming Reflectance Confocal Microscopy (RCM) images into Hematoxylin and Eosin (H&E) stained images.
- To address the challenge of interpreting non-traditional microscopic images for pathologists and surgeons.
Main Methods:
- Developed In-and-Out Net, a Generative Adversarial Network (GAN) model.
- Utilized aluminum chloride preprocessing to enhance nuclei contrast in RCM images of skin tissue.
- Trained the model with digital H&E labels from two fluorescence channels, ensuring pixel-level ground truth without image registration.
Main Results:
- The In-and-Out Net model efficiently transformed RCM images into H&E stained images.
- Achieved state-of-the-art performance in digital staining tasks, validated through comparative analysis and ablation studies.
- Successfully generated perfectly matched input and ground truth images without the need for registration.
Conclusions:
- In-and-Out Net provides a valuable tool for digital staining, enhancing histological image analysis.
- The proposed method streamlines tissue analysis by generating realistic H&E stains from RCM images.
- This advancement facilitates quicker and more accessible tissue interpretation in digital pathology.
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