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Updated: Jun 17, 2026

Infection of Zebrafish Embryos with Intracellular Bacterial Pathogens
Published on: March 15, 2012
Transcriptional profiling of zebrafish intestines identifies macrophages as host cells for human norovirus infection
Emma Roux1, Reegan J Willms2, Jana Van Dycke1
1Department of Microbiology, Immunology and Transplantation, Rega Institute, Virus-Host Interactions & Therapeutic Approaches (VITA) Research Group, KU Leuven, Leuven, Belgium.
Abstract:
Human noroviruses (HuNoVs) are a major cause of diarrheal disease, yet critical aspects of their biology, including cellular tropism, remain unclear. Although research has traditionally focused on the intestinal epithelium, the hypothesis that HuNoV infects macrophages has been recurrently discussed and is investigated here using a zebrafish larval model. Through single-cell RNA sequencing of dissected zebrafish intestines, we unbiasedly identified macrophages as host cells for HuNoV replication, with all three open reading frames mapped to individual macrophages. Notably, HuNoV preferentially infects actively phagocytosing inflammatory macrophages. HuNoV capsid proteins and double-stranded RNA colocalized within intestinal macrophages of infected zebrafish larvae, and the negative-strand RNA intermediate was detected within FACS-sorted macrophages. Flow cytometry confirmed viral replication within these macrophages, constituting approximately 23% of HuNoV's host cells. Identifying macrophages as host cells prompts a reevaluation of their role in HuNoV pathogenesis, offering new directions for understanding and controlling this infection.
Insights
Human noroviruses (HuNoVs) infect inflammatory macrophages in the zebrafish intestine, challenging the focus on epithelial cells. This discovery redefines the understanding of norovirus pathogenesis and control strategies.
Area of Science:
- Virology
- Immunology
- Gastroenterology
Background:
- Human noroviruses (HuNoVs) are a leading cause of acute gastroenteritis.
- The precise cellular targets and tropism of HuNoVs within the host remain incompletely understood.
- Previous research primarily focused on the intestinal epithelium, overlooking other potential host cells.
Purpose of the Study:
- To investigate the cellular tropism of HuNoVs within the host.
- To determine if macrophages serve as host cells for HuNoV replication.
- To explore the role of macrophages in HuNoV infection dynamics.
Main Methods:
- Utilized a zebrafish larval model for HuNoV infection studies.
- Employed single-cell RNA sequencing (scRNA-seq) to identify host cells.
- Applied fluorescence-activated cell sorting (FACS) and flow cytometry for cellular analysis.
- Performed immunofluorescence to detect viral components within host cells.
Main Results:
- Unbiased scRNA-seq identified macrophages as host cells for HuNoV replication.
- HuNoV preferentially infected actively phagocytosing inflammatory macrophages.
- Viral RNA and proteins were detected within intestinal macrophages, confirming replication.
- Macrophages constituted approximately 23% of the identified HuNoV host cells.
Conclusions:
- Macrophages, particularly inflammatory subtypes, are significant host cells for HuNoV replication.
- This finding necessitates a reevaluation of the role of macrophages in HuNoV pathogenesis.
- Identifies novel avenues for developing strategies to control norovirus infections.
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