The PNUTS phosphatase complex controls transcription pause release

Jessica R Kelley1, Emilia Dimitrova1, Maciej Maciuszek1

  • 1Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.

Molecular Cell
|November 27, 2024
PubMed

Insights

The PNUTS-PP1 phosphatase complex is crucial for releasing transcription pauses, a vital step for gene expression. This finding reveals a new regulatory role for phosphatases in controlling RNA polymerase II activity.

Area of Science:

  • Molecular Biology
  • Gene Regulation
  • Biochemistry

Background:

  • Gene expression involves tightly regulated steps like initiation, pausing, elongation, and termination.
  • Kinases and phosphatases modulate RNA polymerase II (RNA Pol II) activity and transcription factor phosphorylation.
  • The precise roles of phosphatases in transcription, particularly pause release, are not fully understood.

Purpose of the Study:

  • To investigate the role of the mouse PNUTS-PP1 phosphatase complex in gene transcription.
  • To determine if PNUTS-PP1 regulates transcription beyond its known function in termination.

Main Methods:

  • Utilized mouse models to study gene transcription.
  • Investigated the function of the PNUTS-PP1 complex and its PP1 subunit.
  • Analyzed the phosphorylation status of factors involved in transcription pause release and elongation.

Main Results:

  • Discovered that the PNUTS-PP1 phosphatase complex is essential for transcription pause release.
  • Demonstrated that this pause release function is critical for most RNA Pol II-dependent gene transcription.
  • Showed that the PNUTS complex regulates the phosphorylation of key factors required for pause release and elongation.

Conclusions:

  • The PNUTS-PP1 complex plays a critical, previously unrecognized role in transcription pause release.
  • This phosphatase complex is essential for the regulation of RNA Pol II-dependent transcription.
  • PNUTS-PP1 acts as a key regulator of the transition from paused to elongating RNA Pol II.

Related Concept Videos

Transcription Elongation Factors02:35

Transcription Elongation Factors

Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
10.7K
Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
13.1K
Transcription Attenuation in Prokaryotes02:42

Transcription Attenuation in Prokaryotes

Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure.  Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.1K
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
6.9K
Phosphoinositides and PIPs01:42

Phosphoinositides and PIPs

Phosphoinositides are a group of phospholipids containing a glycerol backbone with two fatty acid chains and a phosphate attached to a myoinositol sugar ring. The inositol head group extends into the cytoplasm, where it is modified by adding phosphate groups to form phosphatidylinositol phosphates or PIPs.
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
8.4K