Related Experiment Video
Updated: Jun 6, 2025

09:20
Simultaneous Measurement of HDAC1 and HDAC6 Activity in HeLa Cells Using UHPLC-MS
Published on: August 10, 2017
8.5K
Slow-Binding and Covalent HDAC Inhibition: A New Paradigm?
Yasir S Raouf1, Carlos Moreno-Yruela2
1Department of Chemistry, United Arab Emirates University, P.O. Box No. 15551 Al Ain, UAE.
JACS Au
|November 29, 2024
Summary
Histone deacetylase (HDAC) inhibitors are crucial in cancer therapy. Emerging strategies focus on slow-binding and covalent inhibition to enhance drug effectiveness and reduce toxicities for better patient outcomes.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Dysregulated protein post-translational modification is a hallmark of human diseases.
- Histone deacetylases (HDACs) are key regulators of disease pathways and drug targets.
- First-generation HDAC inhibitors show limited efficacy and significant toxicities.
Purpose of the Study:
- To review the limitations of current HDAC inhibitors.
- To explore emerging noncanonical mechanistic approaches for HDAC inhibition.
- To discuss the potential of new strategies to improve HDAC inhibitor therapy.
Main Methods:
- Literature review of recent advancements in HDAC inhibitor design.
- Analysis of noncanonical mechanistic approaches, including slow-binding and covalent inhibition.
- Discussion of pharmacokinetic and pharmacodynamic improvements.
Main Results:
- First-generation HDAC inhibitors have notable limitations in efficacy and safety.
- Noncanonical inhibition strategies show promise for enhanced drug-target residence time.
- Slow-binding and covalent inhibitors may offer improved pharmacokinetic and pharmacodynamic profiles.
Conclusions:
- A shift towards noncanonical HDAC inhibition mechanisms is emerging.
- New inhibitor designs hold potential for improved preclinical and clinical outcomes.
- Targeting HDACs with advanced strategies may overcome limitations of earlier therapies.
Related Concept Videos
Spreading of Chromatin Modifications
8.2K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
8.2K
Heterochromatin
11.2K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
11.2K
Histone Modification
13.1K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
13.1K
Nucleosome Remodeling
9.0K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.0K
Cooperative Binding of Transcription Regulators
6.4K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.4K
Chromatin Modification in iPS Cells
1.6K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
1.6K

