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Visualizing DNA Damage Repair Proteins in Patient-Derived Ovarian Cancer Organoids via Immunofluorescence Assays
Published on: February 24, 2023
RAD51 recruitment but not replication fork stability associates with PARP inhibitor response in ovarian cancer
Francien Talens1, Vivian Oliviera Nunes Teixeira1, Yannick P Kok1
1Department of Medical Oncology, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713GZ Groningen, the Netherlands.
Abstract:
Poly(ADP-ribose) polymerase (PARP) inhibitors (PARPis) are currently used to treat BRCA1/2 mutant cancers. Although PARPi sensitivity has been attributed to homologous recombination (HR) defects, other roles of HR factors have also been linked to response to PARPi, including replication fork protection. In this study, we investigated PARPi sensitivity in ovarian cancer patient-derived xenograft (PDX) models in relation to HR proficiency and replication fork protection. Analysis of BRCA1/2 status showed that in our cohort of 31 ovarian cancer PDX models 22.6% harbored a BRCA1/2 alteration (7/31), and 48.3% (15/31) were genomically unstable as measured by copy number alteration analysis. In vivo, PARPi olaparib response was measured in 15 selected PDX models. Functional assessment of HR using ex vivo irradiation-induced RAD51 foci formation identified all olaparib-sensitive PDX models, including four models without BRCA1/2 alterations. In contrast, replication fork protection or replication speed in ex vivo tumor tissue did not correlate with olaparib response. Targeted panel sequencing in olaparib-sensitive models lacking BRCA1/2 alterations revealed a MUS81 variant as a possible mechanism underlying PARPi sensitivity. Combined, we show that ex vivo RAD51 analysis effectively predicts in vivo olaparib response and revealed a subset of PARPi-sensitive, HR-deficient ovarian cancer PDX models, lacking a BRCA1/2 alteration.
Insights
Poly(ADP-ribose) polymerase (PARP) inhibitors show promise for treating BRCA1/2 mutant cancers. Ex vivo RAD51 analysis effectively predicts in vivo response to PARP inhibitors, identifying sensitive models lacking BRCA1/2 alterations.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Poly(ADP-ribose) polymerase (PARP) inhibitors (PARPis) are a key treatment for BRCA1/2 mutant cancers.
- PARPi sensitivity is often linked to homologous recombination (HR) defects, but other HR factor roles, like replication fork protection, are also implicated.
- Understanding these mechanisms is crucial for expanding PARPi efficacy.
Purpose of the Study:
- To investigate PARPi sensitivity in ovarian cancer patient-derived xenograft (PDX) models.
- To correlate PARPi response with HR proficiency and replication fork protection.
- To identify novel mechanisms of PARPi sensitivity in BRCA1/2 wild-type cancers.
Main Methods:
- Analysis of BRCA1/2 status and genomic instability in 31 ovarian cancer PDX models.
- In vivo assessment of olaparib response in 15 selected PDX models.
- Ex vivo functional assessment of HR using irradiation-induced RAD51 foci formation and replication fork protection assays.
- Targeted panel sequencing of olaparib-sensitive models lacking BRCA1/2 alterations.
Main Results:
- 22.6% of PDX models harbored BRCA1/2 alterations, and 48.3% showed genomic instability.
- Ex vivo RAD51 foci formation successfully identified all in vivo olaparib-sensitive PDX models, including four without BRCA1/2 alterations.
- Replication fork protection and speed did not correlate with olaparib response.
- A MUS81 variant was identified as a potential mechanism for PARPi sensitivity in BRCA1/2 wild-type models.
Conclusions:
- Ex vivo RAD51 analysis is an effective predictor of in vivo olaparib response in ovarian cancer PDX models.
- A subset of PARPi-sensitive, HR-deficient ovarian cancer PDX models lacking BRCA1/2 alterations was identified.
- These findings suggest potential new therapeutic strategies for ovarian cancers with specific HR defects.
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