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Updated: Jun 6, 2025

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Integrative analysis identifies the atypical repressor E2F8 as a targetable transcriptional activator driving lethal
Furong Huang1, Kexin Li1, Zhong Chen1
1Department of Pathology, Duke University School of Medicine, Durham, NC, USA.
Abstract:
Acquired resistance to androgen receptor (AR)-targeted therapies underscores the need to identify alternative therapeutic targets for treating lethal prostate cancer. In this study, we evaluated the prognostic significance of 1635 human transcription factors (TFs) by analyzing castration-resistant prostate cancer (CRPC) datasets from the West and East Stand Up to Cancer (SU2C) cohorts. Through this screening approach, we identified E2F8, a putative transcriptional repressor, as a TF consistently associated with poorer patient outcomes in both cohorts. Notably, E2F8 is highly expressed and active in AR-negative CRPC compared to AR-positive CRPC. Integrative profiling of E2F8 cistromes and transcriptomes in AR-negative CRPC cells revealed that E2F8 directly and non-canonically activates target oncogenes involved in cancer-associated pathways. To target E2F8 in CRPC, we employed the CRISPR/CasRx system to knockdown E2F8 mRNA, resulting in effective and specific downregulation of E2F8 and its target oncogenes, as well as significant growth inhibition in AR-negative CRPC in both cultured cells and xenograft models. Our findings identify and characterize E2F8 as a targetable transcriptional activator driving CRPC, particularly the growth of AR-negative CRPC.
Insights
Researchers identified E2F8 as a key driver in lethal prostate cancer, particularly in cases resistant to androgen receptor (AR) therapies. Targeting E2F8 shows promise for inhibiting tumor growth in advanced prostate cancer.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Acquired resistance to androgen receptor (AR)-targeted therapies is a major challenge in treating lethal prostate cancer.
- Identifying novel therapeutic targets is crucial for improving outcomes in castration-resistant prostate cancer (CRPC).
Purpose of the Study:
- To screen human transcription factors (TFs) for prognostic significance in CRPC.
- To identify and characterize novel therapeutic targets for AR-negative CRPC.
Main Methods:
- Analysis of CRPC datasets from West and East Stand Up to Cancer (SU2C) cohorts to evaluate 1635 TFs.
- Integrative profiling of E2F8 cistromes and transcriptomes in AR-negative CRPC cells.
- CRISPR/CasRx system used for E2F8 mRNA knockdown.
Main Results:
- E2F8 was identified as a TF consistently associated with poorer patient outcomes in CRPC.
- E2F8 is highly expressed and active in AR-negative CRPC.
- E2F8 directly activates oncogenes involved in cancer pathways and its knockdown inhibits CRPC growth in vitro and in vivo.
Conclusions:
- E2F8 is a targetable transcriptional activator driving CRPC, especially AR-negative CRPC.
- Targeting E2F8 represents a potential therapeutic strategy for advanced prostate cancer.
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