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Meiotic DNA break resection and recombination rely on chromatin remodeler Fun30
Pei-Ching Huang1,2,3, Soogil Hong4, Hasan F Alnaser5
1Weill Cornell Graduate School of Medical Sciences, Cornell University, New York, NY, 10021, USA.
Abstract:
DNA double-strand breaks (DSBs) are nucleolytically processed to generate single-stranded DNA for homologous recombination. In Saccharomyces cerevisiae meiosis, this resection involves nicking by the Mre11-Rad50-Xrs2 complex (MRX), then exonucleolytic digestion by Exo1. Chromatin remodeling at meiotic DSBs is thought necessary for resection, but the remodeling enzyme was unknown. Here we show that the SWI/SNF-like ATPase Fun30 plays a major, nonredundant role in meiotic resection. A fun30 mutation shortened resection tracts almost as severely as an exo1-nd (nuclease-dead) mutation, and resection was further shortened in a fun30 exo1-nd double mutant. Fun30 associates with chromatin in response to DSBs, and the constitutive positioning of nucleosomes governs resection endpoint locations in the absence of Fun30. We infer that Fun30 promotes both the MRX- and Exo1-dependent steps in resection, possibly by removing nucleosomes from broken chromatids. Moreover, the extremely short resection in fun30 exo1-nd double mutants is accompanied by compromised interhomolog recombination bias, leading to defects in recombination and chromosome segregation. Thus, this study also provides insight about the minimal resection lengths needed for robust recombination.
Insights
The SWI/SNF-like ATPase Fun30 is crucial for DNA double-strand break (DSB) resection during meiosis in yeast. Loss of Fun30 severely impairs resection, impacting homologous recombination and chromosome segregation.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA double-strand breaks (DSBs) require nucleolytic processing for homologous recombination.
- In yeast meiosis, DSB resection involves the MRX complex and Exo1.
- The role of chromatin remodeling in meiotic DSB resection was previously unknown.
Purpose of the Study:
- To identify the chromatin remodeler involved in meiotic DSB resection.
- To elucidate the function of Fun30 in DSB repair pathways.
- To understand the relationship between resection length and meiotic recombination.
Main Methods:
- Yeast genetics (mutant analysis: fun30, exo1-nd, double mutants).
- Chromatin immunoprecipitation to assess protein association with DSBs.
- Analysis of resection tract lengths and homologous recombination outcomes.
Main Results:
- The SWI/SNF-like ATPase Fun30 plays a major, nonredundant role in meiotic resection.
- fun30 mutations significantly shorten resection tracts, comparable to exo1-nd mutations.
- Fun30 associates with chromatin at DSBs, suggesting a role in nucleosome removal.
- fun30 exo1-nd double mutants exhibit severely compromised resection, reduced interhomolog recombination bias, and chromosome segregation defects.
Conclusions:
- Fun30 is essential for both MRX- and Exo1-dependent steps in meiotic DSB resection.
- Fun30 likely promotes resection by remodeling nucleosomes at DSBs.
- Minimal resection length is critical for proper homologous recombination and chromosome segregation during meiosis.
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