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Updated: Jun 6, 2025

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
The putative error prone polymerase REV1 mediates DNA damage and drug resistance in Candida albicans
Michelle R Agyare-Tabbi1, Deeva Uthayakumar1,2, Desiree Francis1
1Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1H 5N4 Canada.
Abstract:
Antimicrobial-induced DNA damage, and subsequent repair via upregulation of DNA repair factors, including error-prone translesion polymerases, can lead to the increased accumulation of mutations in the microbial genome, and ultimately increased risk of acquired mutations associated with antimicrobial resistance. While this phenotype is well described in bacterial species, it is less thoroughly investigated amongst microbial fungi. Here, we monitor DNA damage induced by antifungal agents in the fungal pathogen Candida albicans, and find that commonly used antifungal drugs are able to induce DNA damage, leading to the upregulation of transcripts encoding predicted error-prone polymerases and related factors. We focus on REV1, encoding a putative error-prone polymerase, and find that while deleting this gene in C. albicans leads to increased sensitivity to DNA damage, it also unexpectedly renders cells more likely to incur mutations and evolve resistance to antifungal agents. We further find that deletion of REV1 leads to a significant depletion in the uncharacterized protein Shm1, which itself plays a role in fungal mutagenesis. Together, this work lends new insight into previously uncharacterized factors with important roles in the DNA damage response, mutagenesis, and the evolution of antifungal drug resistance.
Insights
Antifungal drugs cause DNA damage in Candida albicans, increasing mutations and resistance. Deleting the REV1 gene unexpectedly accelerates antifungal resistance, revealing new insights into DNA repair and mutagenesis.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Antimicrobial use can induce DNA damage, promoting mutations and antimicrobial resistance, a phenomenon well-studied in bacteria but less so in fungi.
- The fungal pathogen *Candida albicans* is a significant cause of opportunistic infections, and understanding its resistance mechanisms is crucial.
Purpose of the Study:
- To investigate DNA damage induced by antifungal agents in *Candida albicans*.
- To explore the role of the error-prone polymerase REV1 in the DNA damage response, mutagenesis, and antifungal resistance evolution in *C. albicans*.
Main Methods:
- Monitoring DNA damage in *C. albicans* after exposure to antifungal drugs.
- Analyzing the upregulation of DNA repair factors, including putative error-prone polymerases.
- Gene deletion studies focusing on *REV1* and assessing sensitivity to DNA damage and mutation rates.
- Investigating the impact of *REV1* deletion on the uncharacterized protein Shm1.
Main Results:
- Common antifungal drugs induce DNA damage in *C. albicans*.
- Antifungal treatment leads to the upregulation of transcripts for error-prone polymerases and related factors.
- Deletion of *REV1* increases sensitivity to DNA damage but paradoxically enhances mutation acquisition and antifungal resistance evolution.
- Loss of *REV1* results in depletion of the protein Shm1, which is implicated in fungal mutagenesis.
Conclusions:
- Antifungal-induced DNA damage and repair pathways contribute to the evolution of antifungal resistance in *C. albicans*.
- The error-prone polymerase REV1 and the protein Shm1 play complex roles in the DNA damage response and mutagenesis, impacting antifungal resistance.
- This study provides novel insights into the mechanisms underlying antifungal drug resistance in a key fungal pathogen.
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