Related Experiment Video
Updated: Jun 5, 2025

10:12
Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
2.7K
ATAD5-BAZ1B interaction modulates PCNA ubiquitination during DNA repair.
Yeongjae Kim1,2, Na Young Ha1, Mi-Sun Kang1
1Center for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.
Nature Communications
|December 3, 2024
Summary
BAZ1B prevents premature de-ubiquitination of mono-ubiquitinated PCNA (mono-Ub-PCNA), a key step for DNA repair. This regulation by BAZ1B safeguards genome integrity during oxidative stress.
Area of Science:
- Molecular Biology
- DNA Replication and Repair
- Chromatin Remodeling
Background:
- Mono-ubiquitinated PCNA (mono-Ub-PCNA) is crucial for bypassing DNA lesions during replication stress.
- De-ubiquitination of PCNA is essential for resuming high-fidelity DNA synthesis after stalled fork resolution.
- The ATAD5-UAF1-USP1 complex mediates PCNA de-ubiquitination, but its regulation is not fully understood.
Purpose of the Study:
- To investigate the regulatory mechanisms controlling timely mono-Ub-PCNA de-ubiquitination.
- To elucidate the role of BAZ1B in the ATAD5-mediated de-ubiquitination pathway.
- To understand how BAZ1B influences cellular response to oxidative stress.
Main Methods:
- Investigated the interaction between BAZ1B and ATAD5, focusing on the ATAD5 UAF1-binding domain.
- Assessed the effect of disrupting the ATAD5-BAZ1B interaction on mono-Ub-PCNA levels after hydrogen peroxide treatment.
- Evaluated the sensitivity of cells with impaired BAZ1B binding to oxidative stress.
Main Results:
- BAZ1B, a subunit of the WICH complex, directly interacts with ATAD5 at its UAF1-binding domain.
- Disruption of the ATAD5-BAZ1B interaction leads to premature de-ubiquitination of mono-Ub-PCNA.
- Cells with impaired BAZ1B binding exhibit increased sensitivity to oxidative stress.
Conclusions:
- BAZ1B acts as a crucial regulator, preventing the premature de-ubiquitination of mono-Ub-PCNA.
- The BAZ1B-ATAD5 interaction is vital for maintaining genome integrity under oxidative stress conditions.
- BAZ1B fine-tunes the ATAD5-mediated de-ubiquitination process, ensuring proper DNA repair and cell survival.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
9.0K
In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
9.0K
Long-patch Base Excision Repair
7.0K
Since the discovery of the two BER pathways, there has been a debate about how a cell chooses one pathway over the other and the factors determining this selection. Numerous in vitro experiments have pointed out multiple determinants for the sub-pathway selection. These are:
7.0K
Base-pairing and DNA Repair
64.6K
64.6K
Translesion DNA Polymerases
9.8K
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
9.8K
Covalently Linked Protein Regulators
6.8K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
These groups modify specific amino acids in a protein....
6.8K
Base Excision Repair
22.0K
One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
The first step of...
22.0K

