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Updated: Jun 5, 2025

Autofluorescence Imaging to Evaluate Red Algae Physiology
Published on: February 17, 2023
Algal classification and Chlorophyll-a concentration determination using convolutional neural networks and
Xujie Shi1, Denghui Wang1, Lei Li2
1State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China.
Abstract:
In recent years, the frequency of harmful algal blooms has increased, leading to the release of large quantities of toxins and compounds that cause unpleasant odors and tastes, significantly compromising drinking water quality. Chlorophyll-a (Chl-a) is commonly used as a proxy for algal biomass. However, current methods for measuring Chl-a concentration face challenges in accurately quantifying algae by categories and effectively adapting to natural aquatic environments. This study combined convolutional neural networks (CNNs) and three-dimensional fluorescence data matrices to address these challenges. The algal classification model achieved over 99.5% accuracy in identifying thirteen types of algal samples, with class activation maps showing that the model primarily focused on algal pigment regions. In determining Chl-a concentrations of each algal species in mixed algae solutions (Microcystis aeruginosa, Cyclotella, and Chlorella), the Chl-a models demonstrated Mean Absolute Percentage Errors (MAPEs) ranging from 6.55% to 10.56% in the ultrapure water background, 11.57%-14.12% in the Qingcaosha Reservoir raw water background, and 21.46%-123.37% in the Lake Taihu raw water background. After calibration, the models were significantly improved, achieving MAPEs ranging from 11.86% to 14.18% in the Lake Taihu raw water background. Discrepancies in determination performance indicated that the intensity and locations of characteristic algal pigment fluorescence peaks greatly influenced the Chl-a models' accuracy. This research introduces a novel approach for algal classification and Chl-a concentration determination in water bodies, with significant potential for practical applications.
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